View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14762_low_15 (Length: 370)
Name: NF14762_low_15
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_15 |
 | |
|
| [»] scaffold1343 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 169 - 364
Target Start/End: Complemental strand, 45783285 - 45783090
Alignment:
| Q |
169 |
ccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttcatatatctaatgagagatcatactatttatatca |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45783285 |
ccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttcatatatctaatgagagatcatactatttatatca |
45783186 |
T |
|
| Q |
269 |
aaagaaatccaatggtatgtgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattacctctgtg |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45783185 |
aaagaaatccaatggtatgtgttctacttatcatttatttactacttagtatgatcctactaattgaccaaaaccaaatatgaaattacctctgtg |
45783090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 45783453 - 45783389
Alignment:
| Q |
1 |
tatcacaagatgtaaccagtgctatgaaataaagaaagttagaagtttccttgatatggatagta |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45783453 |
tatcacaagatgtaaccagtgctatgaaataaagaaagttagaagtttccttgatatggatagta |
45783389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1343 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1343
Description:
Target: scaffold1343; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 261 - 327
Alignment:
| Q |
169 |
ccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttctaattaacttca |
235 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
261 |
ccataaaccaataaaatcagatgcctaaagaaaaactgataatgaactagttttctaattaacttca |
327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University