View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_16 (Length: 359)
Name: NF14762_low_16
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 2620741 - 2620877
Alignment:
| Q |
89 |
aatggttaataatattcattttacattttaaattaaatggttaatatatatgtatgaatgtatgatgcctcgtagttgatattgagcagaatgtttttat |
188 |
Q |
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| T |
2620741 |
aatggttaataatattcattttacattttaaaataaatggttaatatatatgtgtgaatgtatgatgcctcgtagttgatattgagcagaacgtttttat |
2620840 |
T |
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| Q |
189 |
ttattcttctacaaacggttagaatgttcttgtatgg |
225 |
Q |
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| T |
2620841 |
ttattcttctacaaaaggttagaatgttcttgtatgg |
2620877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2620587 - 2620716
Alignment:
| Q |
1 |
ctcctctaaagtggggaaaatgtaaagtgaacaaatcaagagatgtctttttgatatggttacaatgttaacttttaatttgttaatcaatggttaataa |
100 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
2620587 |
ctcctctaaagtggggaaaatgtaaattgaaaaaatcaagagatgtctttttgatatggttacaatgttaacttgtaatttgttaatcaatgattaataa |
2620686 |
T |
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| Q |
101 |
tattcattttacattttaaattaaatggtt |
130 |
Q |
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| T |
2620687 |
tattcattttacattttaaagtgaatggtt |
2620716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 2620949 - 2620993
Alignment:
| Q |
297 |
caatggcgccggcagcagcatcattataaacgaaatgttccaaaa |
341 |
Q |
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| T |
2620949 |
caatggcgccggcagcagcatcattataaacgaaatgttccaaaa |
2620993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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