View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_17 (Length: 347)
Name: NF14762_low_17
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 30429914 - 30429590
Alignment:
| Q |
17 |
ataacttgttacatcagaccttattataaa---------aataaacatgatatcaataaattaatcaagtaaattatgcatcttcatgtaaccatctcaa |
107 |
Q |
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|||||||||||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30429914 |
ataacttgttacatcagaccttattataaataaattttaaagaaacatcatatcaaagaattaatcaagtaaattatgcatcttcatgtaaccatctcaa |
30429815 |
T |
|
| Q |
108 |
gatcataggctgcggaggagaaccccttcaaaagtaatccctggtccaaaagccaatcctaacccccattcttcagttccatcatttttcaaataatccc |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30429814 |
gatcaaaggctgcggaggagaaccccttcaaaagtaatccctggtccaaaagccaatcctaacccccattcttcagttccatcatttttcaaataatccc |
30429715 |
T |
|
| Q |
208 |
tcatatactccatcacataaaatatagtattgctactaacatttccaaaattcatcaatgccttcctactacattccaatttatcaccactcaatttgag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30429714 |
tcatatactccatcacataaaatatagtattgctactaacatttccaaaattcatcaatgccttcctactacattccaatttatcaccactcaatttgag |
30429615 |
T |
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| Q |
308 |
tgtattctcaagcttgttaagtatt |
332 |
Q |
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||||||||||||||||||||||||| |
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| T |
30429614 |
tgtattctcaagcttgttaagtatt |
30429590 |
T |
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