View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_2 (Length: 693)
Name: NF14762_low_2
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 31896481 - 31896995
Alignment:
| Q |
1 |
cactctagataacctcctcccatgttgtacacatccttaaacccctgccacacaacaaattgagaatgcagaatgaatagaaattgaggagttaagattt |
100 |
Q |
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| T |
31896481 |
cactctagataacctcctcccatgttgtacacatccttaaacccctgccacacaacaaattgagaatgcagaatgtatagaaattgaggagttaagattt |
31896580 |
T |
|
| Q |
101 |
catattcaaatgatttaattttcatgaagaatgtagtgaagttgacaggaattaacatacttcagctagaagatcagcagttgcatacacagatctcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31896581 |
catattcaaatgatttaattttcatgaagaatgtagtgaagttgacaggaattaacatacttcagctagaagatcagcagttgcatacacagatctcact |
31896680 |
T |
|
| Q |
201 |
ccactttggcaaccctgaaatacaaaatttggttttaatagtttgcaatttagcagtgatattcaaagaacttaagtacaaggtataatactcgtgttat |
300 |
Q |
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| T |
31896681 |
ccactttggcaaccctgaaatacaaaatttggttttaatagtttgcaatttagcagtgatattcaaagaacttaagtacaaggtataatactcgtgttat |
31896780 |
T |
|
| Q |
301 |
agtcgtataattgaagtaaacttctattaaccataccactatgaggtgatcttctttattgcaaagagacgaaacttccttcagaaactctgggttcttc |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31896781 |
agtcatataattgaagtaaacttctattaaccataccactatgaggtgatcttctttattgcaaagagacgaaacttccttcagaaactctgggttcttc |
31896880 |
T |
|
| Q |
401 |
accctccctgttttaaaaaatcacatcattttcattctaacaattgaatttacaaaccttcactaaataaagaatacaaaaaatgtttcaatcaacgcct |
500 |
Q |
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| T |
31896881 |
accctccctgtttt-aaaaatcacatgattttcattctaagaattgaatttacaaaccttcactaaataaagaatacaaaaaatgtttcaatgaacgcct |
31896979 |
T |
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| Q |
501 |
aattttccctacacat |
516 |
Q |
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|||||||||||||||| |
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| T |
31896980 |
aattttccctacacat |
31896995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 526 - 647
Target Start/End: Original strand, 31896971 - 31897092
Alignment:
| Q |
526 |
tgaacacctaattttcgctacacattcaatatatggtaattacatgtaaaattgtggttcatctgttgattaatttaaaccacgttgaaaattatgtagt |
625 |
Q |
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||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
31896971 |
tgaacgcctaattttccctacacattccatatatggtaattacatgtaaaattgtggttcatccgttgattaatttaaaccacgttgaaaattctgtagt |
31897070 |
T |
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| Q |
626 |
tgaattaaccataattttgatt |
647 |
Q |
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|||||||||||||||||||||| |
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| T |
31897071 |
tgaattaaccataattttgatt |
31897092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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