View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14762_low_26 (Length: 253)

Name: NF14762_low_26
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14762_low_26
NF14762_low_26
[»] chr7 (3 HSPs)
chr7 (3-236)||(45243545-45243778)
chr7 (3-236)||(45230283-45230511)
chr7 (3-236)||(45237801-45238029)
[»] chr1 (8 HSPs)
chr1 (3-125)||(29467843-29467965)
chr1 (3-123)||(29443384-29443504)
chr1 (168-231)||(29423145-29423208)
chr1 (168-231)||(29453503-29453566)
chr1 (168-226)||(29443520-29443578)
chr1 (3-91)||(29423256-29423344)
chr1 (3-123)||(29453367-29453487)
chr1 (168-236)||(29467979-29468047)
[»] chr2 (22 HSPs)
chr2 (3-123)||(9061204-9061324)
chr2 (3-106)||(9320958-9321061)
chr2 (3-123)||(8573568-8573688)
chr2 (6-106)||(9328575-9328675)
chr2 (3-120)||(9284253-9284370)
chr2 (6-123)||(9291902-9292013)
chr2 (3-225)||(10347650-10347864)
chr2 (168-236)||(8579704-8579772)
chr2 (3-123)||(9065656-9065776)
chr2 (3-106)||(10353085-10353188)
chr2 (3-98)||(10371842-10371937)
chr2 (3-60)||(10335866-10335923)
chr2 (165-226)||(9061355-9061416)
chr2 (3-123)||(9274480-9274600)
chr2 (3-106)||(11987550-11987653)
chr2 (3-106)||(12018951-12019054)
chr2 (3-62)||(16269109-16269168)
chr2 (3-61)||(12012609-12012667)
chr2 (165-226)||(9291807-9291868)
chr2 (6-66)||(7115708-7115768)
chr2 (25-120)||(9315981-9316076)
chr2 (165-226)||(8573722-8573783)
[»] chr3 (2 HSPs)
chr3 (3-123)||(37462448-37462568)
chr3 (77-123)||(39427599-39427645)
[»] chr4 (1 HSPs)
chr4 (3-98)||(26574842-26574940)
[»] scaffold0667 (1 HSPs)
scaffold0667 (19-121)||(4432-4534)
[»] chr8 (2 HSPs)
chr8 (3-62)||(41966768-41966827)
chr8 (172-226)||(41966911-41966965)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 45243778 - 45243545
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45243778 aagaatatggttctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgag 45243679  T
Q  103 tgatcgaagtaaagttctgtttgtaacaaatcatgcaagttacttgtgttgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaataac 202  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45243678 tgatcgaagtaaagttctgttggtaacaaatcatgcaagttacttgtattgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaacaac 45243579  T
Q  203 ttacttatgttcaaggaattcctactttcaatga 236  Q
    ||||||||||||||||||||||||||||||||||    
T  45243578 ttacttatgttcaaggaattcctactttcaatga 45243545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 45230511 - 45230283
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||    
T  45230511 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgtggttcaattttcatttggtatctttgagacctttatgttattcgag 45230412  T
Q  103 tgatcgaagtaaagttctgtttgtaacaaatcatgcaagttacttgtgttgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaataac 202  Q
    ||||| | ||||||| ||||| | ||||||||||||||||||||||| |     ||| ||||| |||||||||||||||||||| |||| |||||| ||     
T  45230411 tgatcaacgtaaagtactgttggcaacaaatcatgcaagttacttgttt-----gtaaatccttggaagctgttttggtatgatttcaagagtgaacaag 45230317  T
Q  203 ttacttatgttcaaggaattcctactttcaatga 236  Q
    ||||| ||||||||||||||||||||||||||||    
T  45230316 ttactcatgttcaaggaattcctactttcaatga 45230283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 45238029 - 45237801
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| || |||  |||||||||||||||||||  ||    
T  45238029 aagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatctgaaattgttgaggcctttatgttattcaag 45237930  T
Q  103 tgatcgaagtaaagttctgtttgtaacaaatcatgcaagttacttgtgttgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaataac 202  Q
     |||||||||||||||||||| |||||||||||||||| |  |      ||| || | ||||||||||| ||||||||||||| ||||| | |||| ||     
T  45237929 cgatcgaagtaaagttctgttggtaacaaatcatgcaactagc-----atgtctgcaaatcctaggaagttgttttggtatgacctcaagaatgaacaag 45237835  T
Q  203 ttacttatgttcaaggaattcctactttcaatga 236  Q
    ||| |||||||| ||||||||||||||| |||||    
T  45237834 ttatttatgttcgaggaattcctactttgaatga 45237801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 29467843 - 29467965
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| | |||||||| |||| ||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||| |||||| |||    
T  29467843 aagaatatggatgtagagatagttggcgtaaactttttactttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgag 29467942  T
Q  103 tgatcgaagtaaagttctgtttg 125  Q
     ||| ||||||  ||||||||||    
T  29467943 cgatggaagtatggttctgtttg 29467965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 29443384 - 29443504
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| | ||||||||  |||||||||||||||||||||| | |||||||||||| ||| | ||||  | ||||||||  |||| |||||| |||    
T  29443384 aagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgag 29443483  T
Q  103 tgatcgaagtaaagttctgtt 123  Q
     ||| ||||||  ||||||||    
T  29443484 cgatagaagtatggttctgtt 29443504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 29423208 - 29423145
Alignment:
Q  168 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttc 231  Q
    |||||||||||||||||||||||| |||||| || ||| || ||||||||||||||||| ||||    
T  29423208 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttc 29423145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 29453503 - 29453566
Alignment:
Q  168 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttc 231  Q
    |||||||||||||||||||||||| |||||| || ||| || |||| |||||||||||| ||||    
T  29453503 gaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttc 29453566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 29443520 - 29443578
Alignment:
Q  168 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattccta 226  Q
    |||||||||||||||||||||||| |||||||   ||| ||||||| ||||||||||||    
T  29443520 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 29443578  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 29423344 - 29423256
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggccttta 91  Q
    |||||||||| | ||||||||  ||||||||||||||||||||||   ||||||||||||  || | |||| || ||||||||| ||||    
T  29423344 aagaatatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggctttta 29423256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 29453367 - 29453487
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| | ||||||||  |||||| |||||||||||||||   |||| ||||||| ||| | |||| || ||||| ||||||||  ||||| |||    
T  29453367 aagaatatggatgtagagatagctggtgtgaactttttactttggcggaatcatgtttcattttacctttgaaaactttgtggcctttagcttattcgag 29453466  T
Q  103 tgatcgaagtaaagttctgtt 123  Q
     ||| ||||||  ||||||||    
T  29453467 cgatggaagtatggttctgtt 29453487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 29467979 - 29468047
Alignment:
Q  168 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatga 236  Q
    |||| ||||||||||||||||||| |||||| |  ||| ||||||| |||||||||||| ||| |||||    
T  29467979 gaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatga 29468047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 9061204 - 9061324
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||||| | ||||||||| ||||||||||  ||    
T  9061204 aagactatggatctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttattctag 9061303  T
Q  103 tgatcgaagtaaagttctgtt 123  Q
    |||| || |||| ||||||||    
T  9061304 tgatggaggtaaggttctgtt 9061324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 9321061 - 9320958
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| | |||| | |||| ||||||||||||||||| |||||| |||    
T  9321061 aagaatatggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgaggcctttaggttattcgag 9320962  T
Q  103 tgat 106  Q
    ||||    
T  9320961 tgat 9320958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 8573568 - 8573688
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |   |||||  |||||| |||||||||| ||||||  ||    
T  8573568 aagaatatggttctagagatagttggtgtaaactttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctag 8573667  T
Q  103 tgatcgaagtaaagttctgtt 123  Q
    |||| ||||||| ||||||||    
T  8573668 tgatggaagtaaggttctgtt 8573688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 9328675 - 9328575
Alignment:
Q  6 aatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtga 105  Q
    ||||||| | |||||||| ||||||||||||||||||| ||||||||||||||||| |||| | |||| ||||||||||||||||| |||||| ||||||    
T  9328675 aatatggatatagagatagttggtgtaaactttttactatggttaaatcgtgtttccatttacctttgaaatctttgaggcctttaggttatttgagtga 9328576  T
Q  106 t 106  Q
    |    
T  9328575 t 9328575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 9284253 - 9284370
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| |||||||||| |||||||||| |||||||||||||||||||  | |||| ||| | |||| ||||||||||||||||| ||||||  ||    
T  9284253 aagaatatggttctagagatagttggtgtaaaatttttactttggttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctag 9284352  T
Q  103 tgatcgaagtaaagttct 120  Q
    |||| | ||||| |||||    
T  9284353 tgatggtagtaaggttct 9284370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 9292013 - 9291902
Alignment:
Q  6 aatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtga 105  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||       |||| ||||||||||||||||||||||||  || ||    
T  9292013 aatatggttctagagatagttggtgtaaactttttactttggttaaatcgcggttca------ctttgaaatctttgaggcctttatgttattctaggga 9291920  T
Q  106 tcgaagtaaagttctgtt 123  Q
    | ||||||| ||||||||    
T  9291919 tggaagtaaggttctgtt 9291902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 10347864 - 10347650
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| | |||||||| ||||||||||||||||||| ||| | | ||||||||| |||| | |||| |||  ||||||||  |||||||||  ||    
T  10347864 aagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttacctttgaaattgttgaggcccatatgttattctag 10347765  T
Q  103 tgatcgaagtaaagttctgtttgtaacaaatcatgcaagttacttgtgttgtatgtacatcctaggaagctgttttggtatgatctcaacagtgaataac 202  Q
    |||| ||||||| |||||||| | || |  |||||        || ||||| | ||||| | |||||||||||||||||||||| | || |||||| ||     
T  10347764 tgatggaagtaaggttctgttggaaagagctcatg--------ttttgttggaggtacaacataggaagctgttttggtatgatttgaagagtgaacaaa 10347673  T
Q  203 ttacttatgttcaaggaattcct 225  Q
    ||| ||||||| |||||||||||    
T  10347672 ttagttatgttgaaggaattcct 10347650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 8579704 - 8579772
Alignment:
Q  168 gaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattcctactttcaatga 236  Q
    |||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||| |||||||||    
T  8579704 gaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattcctaatttcaatga 8579772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 9065656 - 9065776
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||| |||  ||||||  | ||| ||||||| || ||||||   |    
T  9065656 aagaatatggatctagagatagttggtgtaaactttttactttggtcaaatcttgtttccattcacatttgacagcttcgaggcctctaggttattccgg 9065755  T
Q  103 tgatcgaagtaaagttctgtt 123  Q
    |||| ||||||| ||||||||    
T  9065756 tgatggaagtaaggttctgtt 9065776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 10353188 - 10353085
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| | |||||| | ||||||||||||||||||| |||||||||| | |||| |||| | |||| |||||||||||| |||| |||||| |||    
T  10353188 aagaatatggatgtagagagagttggtgtaaactttttactgtggttaaatcttctttcgatttacctttgcaatctttgaggcttttaggttattcgag 10353089  T
Q  103 tgat 106  Q
    ||||    
T  10353088 tgat 10353085  T

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Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 10371937 - 10371842
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttatt 98  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||  ||||   ||| | ||||||||||||||| || || |||||||    
T  10371937 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcaagtttgggtttacctttggaatctttgagacccttgtgttatt 10371842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 10335923 - 10335866
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgttt 60  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  10335923 aagaatatggctgtagagatagttggtgtaaacattttactttggttaaatcgtgttt 10335866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 9061355 - 9061416
Alignment:
Q  165 taggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattccta 226  Q
    ||||||||||||||||||||||||||| |||||| || ||| ||||||| ||||||||||||    
T  9061355 taggaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattccta 9061416  T

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Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 9274600 - 9274480
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| |||| ||||| |||||||||||||||||||||| |  || | ||||||  | |  ||||||||  ||| ||||||||||||||||  ||    
T  9274600 aagaatatggttctacagatagttggtgtaaactttttactttgatggaaccttgtttccttgtagatttggaaatttttaggcctttatgttattctag 9274501  T
Q  103 tgatcgaagtaaagttctgtt 123  Q
    |||| ||||||| ||||||||    
T  9274500 tgatggaagtaaggttctgtt 9274480  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 11987550 - 11987653
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| | |||||||| ||||||||||||||| || ||| |  |||||||||||  ||| | |||| |||||||||| |||||  |||||| |||    
T  11987550 aagaatatggatgtagagatagttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagccctttgggttattcgag 11987649  T
Q  103 tgat 106  Q
    ||||    
T  11987650 tgat 11987653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 12018951 - 12019054
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| | |||||||| |||||||||||||||||||||| |  |||||||||||  ||| | |||   || |||||| |||||| |||||| |||    
T  12018951 aagaatatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagccctttaggttattcgag 12019050  T
Q  103 tgat 106  Q
    ||||    
T  12019051 tgat 12019054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 16269168 - 16269109
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttca 62  Q
    |||| ||||| | |||||||| |||||| ||||||||||| |||||||||||||||||||    
T  16269168 aagagtatggatatagagatagttggtgcaaactttttaccttggttaaatcgtgtttca 16269109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 12012609 - 12012667
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttc 61  Q
    |||||||||| | || ||||| ||||||||||||||||||||||||  |||||||||||    
T  12012609 aagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgtttc 12012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 9291868 - 9291807
Alignment:
Q  165 taggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattccta 226  Q
    |||||||||||||||||||||| | || |||||| || ||| ||||||| ||||||||||||    
T  9291868 taggaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattccta 9291807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 7115708 - 7115768
Alignment:
Q  6 aatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattt 66  Q
    ||||||| |||||||| |  ||||||||||||||||| |||||||| ||||||||| ||||    
T  7115708 aatatggatctagagacagctggtgtaaactttttacattggttaattcgtgtttcgattt 7115768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 9316076 - 9315981
Alignment:
Q  25 ttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgatcgaagtaaagttct 120  Q
    ||||||||||||||||||||||||||| || ||||||| |||   |||| | | ||||| ||||||| ||||||  |||||  ||||||| |||||    
T  9316076 ttggtgtaaactttttactttggttaattcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaaggttct 9315981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 8573722 - 8573783
Alignment:
Q  165 taggaagctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattccta 226  Q
    |||||||||||||||||||||| | || |||||| || | | ||||||| ||||||||||||    
T  8573722 taggaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattccta 8573783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 37462568 - 37462448
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggag 102  Q
    |||||||||| |||||||||| |||||||||||||| |||| ||| |||||||||||||| ||  | |||| ||||||||||||||||||||||||  ||    
T  37462568 aagaatatggatctagagatagttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctag 37462469  T
Q  103 tgatcgaagtaaagttctgtt 123  Q
    |||| ||||||| ||| ||||    
T  37462468 tgatggaagtaaggttttgtt 37462448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 39427645 - 39427599
Alignment:
Q  77 tctttgaggcctttatgttattggagtgatcgaagtaaagttctgtt 123  Q
    ||||||| ||||||||||||||  |||||| ||||||||||||||||    
T  39427645 tctttgaagcctttatgttattccagtgatagaagtaaagttctgtt 39427599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 26574940 - 26574842
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttc---aattttcatttggaatctttgaggcctttatgttatt 98  Q
    |||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||||    |||| | | ||||||||||||||| |||| ||||||    
T  26574940 aagaatatggatgtagagatagttggtgtaaactttttactgtggttaaatcgtgtttcgatgatttacctgtggaatctttgaggcttttaggttatt 26574842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 4534 - 4432
Alignment:
Q  19 agatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattggagtgatcgaagtaaagtt 118  Q
    ||||| ||||||||||||||||||| || | ||||||||| ||| ||  |||||| |||||| ||| |||||||||||||  |||||| ||||||| |||    
T  4534 agatagttggtgtaaactttttactatgatgaaatcgtgtgtcacttcacatttgaaatcttcgagtcctttatgttattctagtgatggaagtaaggtt 4435  T
Q  119 ctg 121  Q
    |||    
T  4434 ctg 4432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 41966768 - 41966827
Alignment:
Q  3 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttca 62  Q
    |||||||| | ||||||||||  ||||||||||||||||||||||||||||| |||||||    
T  41966768 aagaatatcgatctagagatagctggtgtaaactttttactttggttaaatcttgtttca 41966827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 41966911 - 41966965
Alignment:
Q  172 ctgttttggtatgatctcaacagtgaataacttacttatgttcaaggaattccta 226  Q
    ||||||||||||||| | || |||||| || ||||||||||| ||||||||||||    
T  41966911 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattccta 41966965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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