View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14762_low_29 (Length: 222)

Name: NF14762_low_29
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14762_low_29
NF14762_low_29
[»] chr8 (8 HSPs)
chr8 (12-203)||(5313857-5314047)
chr8 (14-151)||(5290195-5290332)
chr8 (14-154)||(5306651-5306791)
chr8 (14-126)||(15125880-15125992)
chr8 (14-150)||(5282608-5282745)
chr8 (14-150)||(11833337-11833474)
chr8 (14-126)||(14949383-14949495)
chr8 (14-114)||(5351543-5351643)
[»] chr6 (4 HSPs)
chr6 (14-153)||(31526316-31526455)
chr6 (51-102)||(11756769-11756820)
chr6 (51-99)||(11663932-11663980)
chr6 (62-102)||(12093101-12093141)
[»] chr7 (1 HSPs)
chr7 (50-102)||(39505479-39505531)
[»] chr1 (1 HSPs)
chr1 (51-105)||(44812536-44812590)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 5313857 - 5314047
Alignment:
Q  12 agaagcaaaggattcaaatagctagagcagtctaaaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctat 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313857 agaagcaaaggattcaaatagctagagcagtctacaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctat 5313956  T
Q  112 tctgttcaatgtaaggagaaatcacttttatcatgttaattacaatgaaaatattgtgtcctcaatttagtgtatcaaactaactgcattac 203  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313957 tctgttcaatgtaaggagaaatcac-tttatcatgttaattacaatgaaaatattgtgtcctcaatttagtgtatcaaactaactgcattac 5314047  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 5290332 - 5290195
Alignment:
Q  14 aagcaaaggattcaaatagctagagcagtctaaaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctattc 113  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||| || |    
T  5290332 aagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatctccttgatgatcctttcagtgcagttgatgctcatacagctgcaatac 5290233  T
Q  114 tgttcaatgtaaggagaaatcacttttatcatgttaat 151  Q
    | ||||||||||| | |  ||||||| |||||||||||    
T  5290232 tattcaatgtaagaaaatgtcactttaatcatgttaat 5290195  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 5306651 - 5306791
Alignment:
Q  14 aagcaaaggattcaaatagctagagcagtctaaaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctattc 113  Q
    ||||| ||||||||| |||||||||||||||| | |||||| |||||||||||||| ||||||||||||||||| |||||||| || |||||||| || |    
T  5306651 aagcagaggattcaactagctagagcagtctacagtgatgcagatatctatctccttgatgatcctttcagtgcagttgatgctcatacagctgcaatac 5306750  T
Q  114 tgttcaatgtaaggagaaatcacttttatcatgttaattac 154  Q
    | ||||||||||| | | || ||||||| ||||||||||||    
T  5306751 tattcaatgtaagaaaatataacttttaccatgttaattac 5306791  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 15125880 - 15125992
Alignment:
Q  14 aagcaaaggattcaaatagctagagcagtctaaaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctattc 113  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||| || |    
T  15125880 aagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacagctgcaatac 15125979  T
Q  114 tgttcaatgtaag 126  Q
    | |||||||||||    
T  15125980 tattcaatgtaag 15125992  T

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Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 5282745 - 5282608
Alignment:
Q  14 aagcaaaggattcaaatagctagagcagtctaaaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctattc 113  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||| || |||||||| || |    
T  5282745 aagcaaaggattcaactagctagagcagtctacaatgatgctgatatttatctccttgatgatccttttagtgcagttgatgctcatacagctgcaatac 5282646  T
Q  114 tgttcaatgtaaggagaaatcac-ttttatcatgttaa 150  Q
    | ||||||||||| | | || || ||||||||||||||    
T  5282645 tattcaatgtaagcaaatataacgttttatcatgttaa 5282608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 11833337 - 11833474
Alignment:
Q  14 aagcaaaggattcaaatagctagagcagtctaaaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctattc 113  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||| || || |    
T  11833337 aagcaaaggattcaactagctagagcagtctataatgatgcagatatctatctccttgatgatcctttcagtgcagttgatgctcatacagcagcaatac 11833436  T
Q  114 tgttcaatgtaaggagaaatcac-ttttatcatgttaa 150  Q
    | ||||||||||| | | || || ||||||||||||||    
T  11833437 ttttcaatgtaagcaaatataacattttatcatgttaa 11833474  T

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Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 14949495 - 14949383
Alignment:
Q  14 aagcaaaggattcaaatagctagagcagtctaaaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctattc 113  Q
    ||||||||||||||  | |||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||| || |    
T  14949495 aagcaaaggattcagcttgctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacagctgcaatac 14949396  T
Q  114 tgttcaatgtaag 126  Q
    | |||||||||||    
T  14949395 tattcaatgtaag 14949383  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 5351643 - 5351543
Alignment:
Q  14 aagcaaaggattcaaatagctagagcagtctaaaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctattc 113  Q
    |||||||| |||||| |||||||||||||||| |||||||||||| | ||||| || ||||| ||||| ||||| || |||||||| || ||||| ||||    
T  5351643 aagcaaagaattcaactagctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatactgctgcaattc 5351544  T
Q  114 t 114  Q
    |    
T  5351543 t 5351543  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 31526455 - 31526316
Alignment:
Q  14 aagcaaaggattcaaatagctagagcagtctaaaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagctgctattc 113  Q
    ||||||||||||||| ||||| ||||||| || || |||||||||||||||||||| ||||| |||||||| || ||||| || ||||| ||||||||||    
T  31526455 aagcaaaggattcaactagctcgagcagtttacaacgatgctgatatctatctccttgatgaccctttcagcgcagttgacgcgcacactgctgctattc 31526356  T
Q  114 tgttcaatgtaaggagaaatcacttttatcatgttaatta 153  Q
    ||||||||||||||||  ||||||||| ||||||||||||    
T  31526355 tgttcaatgtaaggagctatcacttttttcatgttaatta 31526316  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 11756769 - 11756820
Alignment:
Q  51 atgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacac 102  Q
    |||||||| | |||||| | |||||||||||||||||||||||||| |||||    
T  11756769 atgctgatgtatatctcttggatgatcctttcagtgctgttgatgcgcacac 11756820  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 11663932 - 11663980
Alignment:
Q  51 atgctgatatctatctcctcgatgatcctttcagtgctgttgatgcaca 99  Q
    |||||||||| |||||| | |||||||| || |||||||||||||||||    
T  11663932 atgctgatatatatctcttggatgatccatttagtgctgttgatgcaca 11663980  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 12093141 - 12093101
Alignment:
Q  62 tatctcctcgatgatcctttcagtgctgttgatgcacacac 102  Q
    |||||| | |||||||||||||||||||||||||| |||||    
T  12093141 tatctcttggatgatcctttcagtgctgttgatgcgcacac 12093101  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 39505531 - 39505479
Alignment:
Q  50 gatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacac 102  Q
    ||||||||||||||||||||||| || || |||||||| ||||| ||||||||    
T  39505531 gatgctgatatctatctcctcgacgaccccttcagtgcagttgacgcacacac 39505479  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 44812536 - 44812590
Alignment:
Q  51 atgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacagc 105  Q
    |||||||||| ||| || | |||||||| |||||||||||||||||||| |||||    
T  44812536 atgctgatatatatatcttggatgatccattcagtgctgttgatgcacaaacagc 44812590  T

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