View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_3 (Length: 583)
Name: NF14762_low_3
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 14 - 563
Target Start/End: Original strand, 41709011 - 41709544
Alignment:
| Q |
14 |
cacagaccacagatggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgattgattttaatcc |
113 |
Q |
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| T |
41709011 |
cacagaccacagatggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgattgattttaatcc |
41709110 |
T |
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| Q |
114 |
agttttcctcaaagttaatttcttctgcaggagcagaagattctggagatagcttaaaatgcaacacagtttaaagcagattattgttttcttcaatagt |
213 |
Q |
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| T |
41709111 |
agttttcctcaaagttaatttcttctg----------------tggagatagcttaaaatgcaacacaatttaaagcagattattgttttcttcaatagt |
41709194 |
T |
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| Q |
214 |
tatgccccatgtttcttataacacaggctgcaatgtgcttagaaattgagagtgtatagacactttaaggtggcttgtttattaagaaaaactgacaagt |
313 |
Q |
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| T |
41709195 |
tatgccccatgtttcttataacacaggctgcaatgtgcttagaaattgagagtgtatagacactttaaggtggcttgtgtattaagaaaaactgacaagt |
41709294 |
T |
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| Q |
314 |
actaccactattattaaacttagttcacttgtcaacattttgacagcacccatatcagtgtagaaaactggacccatttcgtgttcagtatagaaaactg |
413 |
Q |
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| T |
41709295 |
actaccactattattaaacttagttcacttgtcaacattttgacagcacccatattagtgtagaaaactggacccatatcgtgttcagtatagaaaactg |
41709394 |
T |
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| Q |
414 |
aacgcttgtatgacgtgcttgtccaatatcagatgcccgtgttacaattttctgcggttccgacaccaatataacgaatacaaaatttcactatagcaat |
513 |
Q |
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| T |
41709395 |
aacgcttgtatgacgtgcttgtccaatatcagatgcccgtgttacaattttctgcagttccgacaccaatatatcgaatacaaaatttcactatagcaat |
41709494 |
T |
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| Q |
514 |
gagtagatctgctcagtggagtgggctaagattaggaactaatctataat |
563 |
Q |
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| T |
41709495 |
gagtagatctgctcagtggagtgggctaagattaggaactaatctataat |
41709544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 403 - 527
Target Start/End: Complemental strand, 14111682 - 14111558
Alignment:
| Q |
403 |
atagaaaactgaacgcttgtatgacgtgcttgtccaatatcagatgcccgtgttacaattttctgcggttccgacaccaatataacgaatacaaaatttc |
502 |
Q |
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| T |
14111682 |
atagaaaactgaacgcttgtatgatgtgcttatccaatatcagatgcctgtgttacaattttatgaggttccgaccccaatacaacaaatacaaaatttc |
14111583 |
T |
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| Q |
503 |
actatagcaatgagtagatctgctc |
527 |
Q |
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| T |
14111582 |
actataggtatgagtagatttgctc |
14111558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 14112508 - 14112421
Alignment:
| Q |
14 |
cacagaccacagatggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgat |
101 |
Q |
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| T |
14112508 |
cacagcccaaagattgcgttttaaatagtattcgcaatgataaatttccagtgatgtaattcaatatgactaagacagatgcaatgat |
14112421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 14111806 - 14111755
Alignment:
| Q |
128 |
ttaatttcttctgcaggagcagaagattctggagatagcttaaaatgcaaca |
179 |
Q |
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| T |
14111806 |
ttaacttcttctggaggagcaaaagattatggagatagcttaaaatgcaaca |
14111755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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