View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_31 (Length: 218)
Name: NF14762_low_31
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31208798 - 31208930
Alignment:
| Q |
1 |
acccacgtgagtgtta-gtcttatttacatttatgtataattaatttgggataccgacaacaaaaaatccttgatgattaattgaaaataccttctcaaa |
99 |
Q |
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| T |
31208798 |
acccacgtgagtattttgtcttatttatatttatgtataaataatttggcataccgacaacaaaaaatccttgatgattaattgaaaataccttatggaa |
31208897 |
T |
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| Q |
100 |
agcaatgttatcatttaaaatcccatcaacttc |
132 |
Q |
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| T |
31208898 |
agcaatgttatcatttaaaatcccatcaacttc |
31208930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 31241222 - 31241290
Alignment:
| Q |
70 |
ttgatgattaattgaaaataccttc---tca-aaagcaatgttatcatttaaaatcccatcaacttcct |
134 |
Q |
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| T |
31241222 |
ttgatgattaattgaaaataccttgggttaacaaagcaatgttatcatttaaaaccccatcaatttcct |
31241290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 31232284 - 31232320
Alignment:
| Q |
98 |
aaagcaatgttatcatttaaaatcccatcaacttcct |
134 |
Q |
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| T |
31232284 |
aaagcaatgttatcatttaaaaccccatcaatttcct |
31232320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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