View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_4 (Length: 574)
Name: NF14762_low_4
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 13 - 555
Target Start/End: Complemental strand, 1701925 - 1701383
Alignment:
| Q |
13 |
aagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttc |
112 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1701925 |
aagaatatcgagtaaaatgatcaacaaacacaagataatatttgtaaccatgaactgaagtgataggagagggtccccaaacatcagaaaataacagttc |
1701826 |
T |
|
| Q |
113 |
aagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatgaannnnnnnattttctaagttc |
212 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |
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| T |
1701825 |
aagaggagctgtggttttgatagaagaaacagaaaaaggaagcttatgacttttattaatatggcaagaattacaatgaaattttttattttctaaattc |
1701726 |
T |
|
| Q |
213 |
ctaaaactgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaag |
312 |
Q |
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|||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
1701725 |
ctaaaattgccacaagtagacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaag |
1701626 |
T |
|
| Q |
313 |
caagagtagtgggttgatattgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcac |
412 |
Q |
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|||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
1701625 |
caagagcagtgggttgatattgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttac |
1701526 |
T |
|
| Q |
413 |
acagaaaaaggtagggtgaaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagattatgtttagcatttgggacacaaagcacc |
512 |
Q |
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| T |
1701525 |
acagaaaaaggtagggtgaaattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcaca |
1701426 |
T |
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| Q |
513 |
ttatttaatttgaaagtaatattgggggtagggagggtaatag |
555 |
Q |
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| T |
1701425 |
ttatttaatttgaaagtagtattgggggtagggagggtaatag |
1701383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 77 - 555
Target Start/End: Complemental strand, 181434 - 180956
Alignment:
| Q |
77 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
176 |
Q |
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| T |
181434 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
181335 |
T |
|
| Q |
177 |
caagaattacaatgaannnnnnnattttctaagttcctaaaactgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
276 |
Q |
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| T |
181334 |
caagaattacaatgaaattttttattttctaagttcctaaaattgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
181235 |
T |
|
| Q |
277 |
catgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacatataatgaaaggtgtagagatcactgttacttgaacc |
376 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
181234 |
catgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgatattgagacatataatgaaaggtgtagagatcactgttactggaacc |
181135 |
T |
|
| Q |
377 |
gcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgaaattcaagatatgtattgttagacttgcagaatttcttaacagat |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
181134 |
gcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgcaattcaagatatgtattgttagacttgcagaatttcttaacatat |
181035 |
T |
|
| Q |
477 |
atgagattatgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatattgggggtagggagggtaatag |
555 |
Q |
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| T |
181034 |
atgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagtaatatttggggtagggagggtaatag |
180956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 5400652 - 5400484
Alignment:
| Q |
22 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagc |
121 |
Q |
| |
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|||| ||||| |||||||| ||||||||||| |||||||||||| || || ||||| || ||||||||||||||||| || | ||||||| |||| |
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| T |
5400652 |
gagtgaaatggtcaacaaagacaagataatacctgtaaccattaatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggaga |
5400553 |
T |
|
| Q |
122 |
tacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
190 |
Q |
| |
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| |||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
5400552 |
gaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
5400484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 3541627 - 3541459
Alignment:
| Q |
22 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagc |
121 |
Q |
| |
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|||| ||||| |||||||| ||||||||||| ||||||||||| | || || ||||| || ||||||||||||||||| || | ||||||| |||| |
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| T |
3541627 |
gagtgaaatggtcaacaaagacaagataatacttgtaaccattgatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggaga |
3541528 |
T |
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| Q |
122 |
tacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
190 |
Q |
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| |||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
3541527 |
gaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
3541459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 31098901 - 31098805
Alignment:
| Q |
23 |
agtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagagga |
119 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||| | | | | || ||||| |||| ||||||||||||||| | |||||||||||| |
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| T |
31098901 |
agtaaaatgatcaacgaacacaagataatatttgtatccactgatagtgttaattggagagggtctccaaacatcagaaaaaatgagttcaagagga |
31098805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 26592523 - 26592600
Alignment:
| Q |
23 |
agtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcaga |
100 |
Q |
| |
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|||||| || ||||||||||||||||| ||| | |||||||||| || || ||||| || ||||||||||||||||| |
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| T |
26592523 |
agtaaagtggtcaacaaacacaagatagtatctataaccattaatggatgttataggggatggtccccaaacatcaga |
26592600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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