View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_5 (Length: 571)
Name: NF14762_low_5
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 231 - 554
Target Start/End: Complemental strand, 26170095 - 26169777
Alignment:
| Q |
231 |
ccctagtcacacacccaaaaggcactacacttcacctttaaaccttctaagtaacccctcttttggtactttcaaacaatgaggtaaaaaactctactta |
330 |
Q |
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| T |
26170095 |
ccctagtcacacacccaaaaggcaccacacttcacctttaaactttctaagtaacccctcttttggtactttcaaacaatgaggtaaaaaactctactta |
26169996 |
T |
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| Q |
331 |
taattcattttttcaccatagttttgggtacaagatttaactacatatctcttgtctcttttctcttgctactagatccaataactctgccgccattttt |
430 |
Q |
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| T |
26169995 |
taagtcattttttcaccacagttttgggtacaagatttaactacatatctcttgtcttttgtctcttgctactagatccaataactctgccgcca-tttt |
26169897 |
T |
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| Q |
431 |
gaatatcaaattaaatgatgtactctgcaacatattttgaccattgacaaacaatggtgaaacatggcactgcatgtgtcctatattaattgacataatt |
530 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
26169896 |
gaatatcaaattaaattatgtactctgcaacatattttgaccattgacaaacaatggtgaaacatggcacttc----gtcctatattaattgacataatt |
26169801 |
T |
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| Q |
531 |
tgtctttcatgtactatgtaattg |
554 |
Q |
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| T |
26169800 |
tgtctttcatgtactatataattg |
26169777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 26170328 - 26170117
Alignment:
| Q |
24 |
gaaagattgaatcactctaattatgaagtctctctacctaacatgtttagagtgtgttttccaactccattttctcacgtaaaagctccactcctagctc |
123 |
Q |
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| T |
26170328 |
gaaagattgaatcactctaattatgaagtctctgtacctaacatgtttagagtgtgttttccaactccattttctcacgtaaaagctccactcctagctc |
26170229 |
T |
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| Q |
124 |
ttaagtttccttaaatatatgctcttttggtaatgccgnnnnnnnnnnnnattcaagaactccacaagaagcattcaacacaagaatcatgatcttctct |
223 |
Q |
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| T |
26170228 |
ttaaatttctttaaatatatgctcttttggtaatgccgtctctctctctcattcaagaactccacaagaagcattcaacacaagaatcatgatcttctct |
26170129 |
T |
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| Q |
224 |
ttgtgttcccta |
235 |
Q |
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|||||||||||| |
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| T |
26170128 |
ttgtgttcccta |
26170117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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