View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_7 (Length: 510)
Name: NF14762_low_7
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 3089481 - 3089940
Alignment:
| Q |
19 |
agttccctgttcaatcggtttaattggctactatttctaaaacatttgctttaaaggacacaacaaataattcttttggttcttaagctaaacagaaaat |
118 |
Q |
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| T |
3089481 |
agttccctgttcaaccggtttaattggctactatttctaaaacatttgctttaaaggacacaacaaataatt---ttggtccttaagctaaacagaaaat |
3089577 |
T |
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| Q |
119 |
ttgtgaaatagaacctccatgactaatttgtgtgaggttcacaatacttgcatatatattagcatcaatttggcatattcatcaattcattgcatgttaa |
218 |
Q |
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| T |
3089578 |
ttgtgaaatacaacctccatgactaatttgtgtgaggttcacaatacttgcatatatattagcatcaatttggcatattcatca-ttcattgcatgttaa |
3089676 |
T |
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| Q |
219 |
aggattttgttgcgcatgtggttgttgcagaaaaatactttgactcaaggatgccatatgtcatgaaacgaattgctcaaggcggaattcgattagccat |
318 |
Q |
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| T |
3089677 |
aggattttgttgcgcatgtggtttttgcagaaaaatactttgactcaaggatgccatatgtcatgaagcgaattgctcaaggtggaattcgattagccat |
3089776 |
T |
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| Q |
319 |
gattttgaaccaagtgtttggagactctgaagaaggatttgtagcagctacttaagcaaactcatcaacacagtgaccagaaaattagttgtttgaattt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3089777 |
gattttgaaccaagtgtttggagactctgaagaaggatttgtagcagctacttaagcaaactcatcaacacagtgaccagaaaattagttgtttgaattt |
3089876 |
T |
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| Q |
419 |
gtcaataaccactgatcatagggtctaactccatttcttcttaattgttaatggctgcttgatt |
482 |
Q |
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| T |
3089877 |
gtcaataaccattgatcatagggtctaactccatttcttcttaattgttaatgcctgcttgatt |
3089940 |
T |
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