View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14762_low_8 (Length: 472)
Name: NF14762_low_8
Description: NF14762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14762_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 57 - 454
Target Start/End: Complemental strand, 41980025 - 41979628
Alignment:
| Q |
57 |
aaagtttatgaagaaacttgagtaacaagttgctaagaatttataattaataaattaatgactataatgaaaagttcaaaagttatgtaaagaacaaagc |
156 |
Q |
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| T |
41980025 |
aaagtttatgaagaaacttgagtaacaagttactaagaatttataattaataaattaatgactataataaaaagttcaaaagttatgtaaagaacaaagc |
41979926 |
T |
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| Q |
157 |
taataatatatattggtaaaataatgtcgaacataggaatattataccttccttccatgagttgaacgtaaacgagggtaatttttcaagatatcatgga |
256 |
Q |
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| T |
41979925 |
taataatatatattggtaaaataatgtcgaacataggaatattataccttccttccatgagttgaacgtaaacgagggtaatttttcaaaatatcatgga |
41979826 |
T |
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| Q |
257 |
cacgttgagcaatcaccgtccaattctgcaatcaattcaagaaaggtgagaacatgaaatgagattaaaaagaagaaatcgatggttgggggtaggcaat |
356 |
Q |
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| T |
41979825 |
cacgttgagcaatcactgtccaattctgcaatcaattcaagaaaggtgagaacatgaaatgagattaaaaagaagaaatcgatggttgggggtaggcaat |
41979726 |
T |
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| Q |
357 |
taatccttacattctcttctacattacggtaatgtacagaaacacaaaacttgtgattctcaacttttgcgccttcgatgtctttggtaatatcgatg |
454 |
Q |
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| T |
41979725 |
taatccttacattctcttctacattacggtaatgtacagaaacgcaaaacttgtgattctcaacttttgcgccttcgatgtctttggtaatatcgatg |
41979628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 441
Target Start/End: Complemental strand, 1566644 - 1566577
Alignment:
| Q |
374 |
tctacattacggtaatgtacagaaacacaaaacttgtgattctcaacttttgcgccttcgatgtcttt |
441 |
Q |
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| T |
1566644 |
tctacattacgataatgtacagacacacaaaacttgttgttctcaatttttgctcctttgatgtcttt |
1566577 |
T |
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