View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14763_high_1 (Length: 470)
Name: NF14763_high_1
Description: NF14763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14763_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 22 - 457
Target Start/End: Original strand, 40096358 - 40096792
Alignment:
| Q |
22 |
acacaaaatacatgaaaagagtaacttagagaacacaatctaagtttaccaaaacaacaagctatgatatgcttgaagtctaaattgaaatacaaacaaa |
121 |
Q |
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|||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40096358 |
acacaaaatatacgaaatgag-aacttagagaacacaatctaagtttaccaaaacaacaagctatgatattcttgaagtctaaattgaaatacaaacaaa |
40096456 |
T |
|
| Q |
122 |
tcagtccatcaagagtaagcacttattctaagctcaccaactatcatcaaaacaagaaacacatgtaatgctgccgttatgactcttattttccaatgcc |
221 |
Q |
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| T |
40096457 |
tcagtccatcaagagtaagcacttattctaaactcaccaactatcatcaaaacaagaaacacatgtaatgctgccgttatgactcttattttccaatgcc |
40096556 |
T |
|
| Q |
222 |
gtgacacaagagaaaacagacactcctactaaggcagcaaaataagttgcataagcatactatgagatcaatcatgtggcaaattggattacagtatcaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40096557 |
gtgacacaagagaaaacagacactcctactaaggcagcaaaataagttgcataagcatactatgagatcaatcatgtggcaaattggattacagtatcaa |
40096656 |
T |
|
| Q |
322 |
attaattgtgcccgtatatcaaaatttacaatgtccacnnnnnnngggcacctcggttaccgacccctatgaacatttggggaggattgaccaagacata |
421 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40096657 |
attaattgtgcccatatatcaaaatttacaatgtccacaaaaaaagggcacctcggttaccgacccctatgaacatttggggaggattgaccaagacata |
40096756 |
T |
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| Q |
422 |
taaagaatcataatcgcctcaggactgttgaaactg |
457 |
Q |
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| T |
40096757 |
taaagaatcataatcgcctcaggactgttgaaactg |
40096792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 40090593 - 40090858
Alignment:
| Q |
15 |
cacagagacacaaaatacatgaaaagagtaacttagagaacacaatctaagtttaccaaaacaacaagctatgatatgcttgaagtctaaattgaaatac |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40090593 |
cacagagacacaaaatacatgaaatgagtaacttagagaacacaatctaaatttaccaaaacaacaagctatgatatgcttgaagtctaaattgaaatac |
40090692 |
T |
|
| Q |
115 |
aaacaaatcagtccatcaagagtaagcacttattctaagctcaccaactatcatcaaaacaagaaacacatgtaatgctgccgttatgactcttattttc |
214 |
Q |
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|||||||| |||||||||||| ||| |||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
40090693 |
aaacaaattagtccatcaagaataatcacttattctaaactcactaactatcatcataacaagaaacacatgaaatgctgccattatgactcttattttc |
40090792 |
T |
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| Q |
215 |
caatgccgtgacacaagagaaaacagacactcctactaaggcagcaaaataagttgcataagcata |
280 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
40090793 |
caatcccgtgacacaagagaaaacagacacacctactaaggcagcaaaataagtttcataagcata |
40090858 |
T |
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