View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14763_high_3 (Length: 421)

Name: NF14763_high_3
Description: NF14763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14763_high_3
NF14763_high_3
[»] chr3 (4 HSPs)
chr3 (175-409)||(49432876-49433110)
chr3 (9-224)||(49433141-49433358)
chr3 (175-387)||(23007173-23007386)
chr3 (43-224)||(23007417-23007601)
[»] chr1 (4 HSPs)
chr1 (175-387)||(26084416-26084619)
chr1 (34-222)||(26084199-26084383)
chr1 (9-96)||(24636877-24636965)
chr1 (175-387)||(23859852-23860056)
[»] chr7 (15 HSPs)
chr7 (175-387)||(13820224-13820437)
chr7 (43-237)||(13820455-13820652)
chr7 (24-224)||(17719298-17719499)
chr7 (175-387)||(17719063-17719267)
chr7 (43-237)||(12768258-12768455)
chr7 (43-237)||(12512048-12512245)
chr7 (43-260)||(4809642-4809862)
chr7 (175-387)||(4809937-4810151)
chr7 (175-387)||(24859216-24859420)
chr7 (292-388)||(12512408-12512504)
chr7 (275-387)||(12768656-12768768)
chr7 (155-248)||(24859507-24859600)
chr7 (175-248)||(4809857-4809930)
chr7 (175-223)||(12512263-12512311)
chr7 (188-238)||(12512332-12512382)
[»] chr5 (4 HSPs)
chr5 (43-237)||(23761414-23761611)
chr5 (43-237)||(23826875-23827072)
chr5 (175-387)||(23761182-23761396)
chr5 (175-387)||(23826643-23826857)
[»] scaffold0624 (2 HSPs)
scaffold0624 (175-387)||(2230-2433)
scaffold0624 (73-222)||(2466-2617)
[»] chr8 (16 HSPs)
chr8 (175-387)||(28502651-28502854)
chr8 (175-387)||(28510209-28510412)
chr8 (9-186)||(18757868-18758042)
chr8 (43-248)||(27907153-27907361)
chr8 (43-248)||(27953572-27953780)
chr8 (43-248)||(27894914-27895122)
chr8 (276-387)||(18757604-18757715)
chr8 (175-245)||(18757716-18757786)
chr8 (175-388)||(27895129-27895326)
chr8 (175-388)||(27907368-27907565)
chr8 (175-388)||(27953787-27953984)
chr8 (34-130)||(28502385-28502475)
chr8 (34-130)||(28509943-28510033)
chr8 (172-222)||(28502488-28502538)
chr8 (172-222)||(28510046-28510096)
chr8 (171-224)||(18757817-18757869)
[»] chr6 (5 HSPs)
chr6 (34-222)||(24688813-24688997)
chr6 (175-387)||(24689030-24689233)
chr6 (43-237)||(7410473-7410670)
chr6 (269-387)||(24678523-24678641)
chr6 (275-387)||(7410871-7410983)
[»] scaffold0594 (2 HSPs)
scaffold0594 (43-248)||(6956-7164)
scaffold0594 (175-387)||(6736-6949)
[»] chr2 (9 HSPs)
chr2 (43-248)||(23740954-23741162)
chr2 (43-248)||(40064803-40065011)
chr2 (175-387)||(38850831-38851034)
chr2 (34-222)||(38850614-38850798)
chr2 (188-387)||(23740652-23740852)
chr2 (275-370)||(40064551-40064646)
chr2 (233-387)||(35336457-35336611)
chr2 (175-243)||(40064647-40064716)
chr2 (179-248)||(40064723-40064792)
[»] scaffold0427 (1 HSPs)
scaffold0427 (175-387)||(22-225)
[»] chr4 (6 HSPs)
chr4 (74-224)||(54957004-54957156)
chr4 (43-237)||(52480548-52480745)
chr4 (175-312)||(22326580-22326708)
chr4 (9-141)||(22326805-22326931)
chr4 (175-387)||(52480843-52481057)
chr4 (175-387)||(54957248-54957462)
[»] scaffold1414 (1 HSPs)
scaffold1414 (293-387)||(1-95)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 175 - 409
Target Start/End: Complemental strand, 49433110 - 49432876
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcct 274  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  49433110 tttctgcatgtggggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacgccccacttttctgtgcataatggtcct 49433011  T
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  49433010 tttttactgacaagtgctttccgacgaaaacttcgtcgctaattcgtaggaaactactttctaggaaacttcgtcgtaaaattttgtagaaaaatctaat 49432911  T
Q  375 atttcttgtagtgcccggcaataggatgatggaag 409  Q
    ||||||| |||||||||||||||||||||||||||    
T  49432910 atttcttttagtgcccggcaataggatgatggaag 49432876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 49433358 - 49433141
Alignment:
Q  9 gaagaatatagagtaaagaaaatgtgagtgaagagttgtatatttatacacagagatgatgcaacgtaacaaacggctagttagcatgtgggtcccgtgt 108  Q
    |||||| ||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49433358 gaagaaaatagagtgaagaaaatgtgagaaaagagttgtatatttatactcagagatgatgcaacgtaacaaacggctagttagcatgtgggtcccgtgt 49433259  T
Q  109 ttttcgacgaaattttcgtaggtaatatccaccaatcacaaccagcc--acaccctttattcaatggctttctgcatgtgtggccgccgctttcctagga 206  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| ||||||||||||||| |||||  ||||||||||||    
T  49433258 tttccgacgaaattttcgtaggtaatgtccaccaatcacaaccagccacacaccctttattcaacggctttctgcatgtggggccgtagctttcctagga 49433159  T
Q  207 aagtattcctcggtaaag 224  Q
    || ||||| |||||||||    
T  49433158 aaatattcgtcggtaaag 49433141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 23007386 - 23007173
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggtc 272  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||   | |||||||||||||||||||| |     
T  23007386 tttctgcatgtggggccgccgctttcctaggaaattattcctcggtaaagtcagccattcacaagctgccacgtgctccacttttctgtgcataacgctg 23007287  T
Q  273 cttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatcta 372  Q
    |||||| |||||||  |||||||||| ||||||||||||||||||||||| |||||  |||||||||||| ||||||||||| |||||||||||||||||    
T  23007286 cttttt-actgacagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaccgctttctaggaaatttcgtcggaaagttttgtaggaaaatcta 23007188  T
Q  373 atatttcttgtagtg 387  Q
     ||||||||||||||    
T  23007187 gtatttcttgtagtg 23007173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 23007601 - 23007417
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  23007601 gttgtatatttatacacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcgtatgtaatttccacc 23007502  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaag 224  Q
    ||||||||||  |  |||||||||||| ||| | || | |||||||| |||||| |||||||||||||| |||||||||||||||    
T  23007501 aatcacaaccatacacacaccctttatccaacgactgtgtgcatgtggggccgcagctttcctaggaaaatattcctcggtaaag 23007417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 26084416 - 26084619
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcct 274  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||         |||||    
T  26084416 tttctgcatgtggggccgctgctttcctaggaaagtattcctcggtaaaagcagccaatcacaagctggcacgccccacttttctg---------gtcct 26084506  T
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||| |||||   ||||||||||| |||||||||||  |||||||||||||  |||    
T  26084507 tttttactgacatgtgctttcctacgaaaatttcgtcgctaattcgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaat 26084606  T
Q  375 atttcttgtagtg 387  Q
    |||||||||||||    
T  26084607 atttcttgtagtg 26084619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 26084199 - 26084383
Alignment:
Q  34 gagtgaagagttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggta 132  Q
    |||||||||||||||||||||||       ||| ||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  26084199 gagtgaagagttgtatatttata-------atgctgcaacgataacaaacggctagttagaatgcgggtcccgtgttttccgacgaaattttcgtaggta 26084291  T
Q  133 atatccaccaatcacaaccagc--cacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaa 222  Q
    || |||||||||||||||||||  |||||||| ||| ||| ||||||||||||||| |||||| |||||||||||||| ||||| |||||||    
T  26084292 atttccaccaatcacaaccagccacacaccctatatccaacggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaa 26084383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 24636965 - 24636877
Alignment:
Q  9 gaagaatatagagtaaagaaaatgtgagtgaagagttgtatatttatacacagagatgatgcaac-gtaacaaacggctagttagcatg 96  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||    
T  24636965 gaagaaaatagagtgaagaaaatgtgagtgaagagttgtatatttatacatagagattatgtaacggtaacaaacggctagttagcatg 24636877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 23859852 - 23860056
Alignment:
Q  175 tttctgcatgtgtgg-ccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggt 271  Q
    |||||||||||| || |||||||||||||| |||| ||||||| ||||||| ||| || ||||||||| ||||   | |||||||||||| |            
T  23859852 tttctgcatgtgggggccgccgctttcctacgaaattattcctaggtaaagtcagacattcacaagctaccacgtgctccacttttctgtcc-------- 23859943  T
Q  272 ccttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatct 371  Q
       |||||||||| |  |||||||||| ||| ||||||||||||||||||| ||||   |||||||||||| ||||| ||||| |||||||||||||||     
T  23859944 ---tttttactgaaagttgctttccgacgaatatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtaggaaaatcc 23860040  T
Q  372 aatatttcttgtagtg 387  Q
    |  |||||||||||||    
T  23860041 accatttcttgtagtg 23860056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 13820437 - 13820224
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggtc 272  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||| || ||| ||||||||||||||   | |||||||||||||||||||| |     
T  13820437 tttctgaatgtggggccgccgctttcctaggaaattattcctcggtaaagtcacccattcacaagctgccacgtgctccacttttctgtgcataacgctg 13820338  T
Q  273 cttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatcta 372  Q
    |||||| ||||| |  |||||||||| ||||||||||||||||||||||| |||||  |||||||||||| ||||||||||| ||||||||||||||| |    
T  13820337 cttttt-actgatagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaccgctttctaggaaatttcgtcggaaagttttgtaggaaaatcca 13820239  T
Q  373 atatttcttgtagtg 387  Q
     ||||||||||||||    
T  13820238 gtatttcttgtagtg 13820224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 13820652 - 13820455
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||    
T  13820652 gttgtatatttatacacacagatgctgcaacggtaacaaacggctagttagcttgtgggtcccgtgttttccgacgaaattttcgtaggtaatttccacc 13820553  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcaca 237  Q
     |||||||||  |  |||||||||||| |||||||| | |||||||| |||||| |||||||||||||| |||||||||||||||   ||||||||||    
T  13820552 gatcacaaccatacacacaccctttatccaatggctgtgtgcatgtggggccgcagctttcctaggaaaatattcctcggtaaagtaggccaatcaca 13820455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 17719499 - 17719298
Alignment:
Q  24 aagaaaatgtgagtgaagagttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaatt 122  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||||| || | ||||||||||||||||||||| | |||||||| ||||||||||    
T  17719499 aagaaaatgtgagtgaagagttgtatatttataca--gagatgctgcaacggtagctaacggctagttagcatgtgggcctcgtgttttccgacgaaatt 17719402  T
Q  123 ttcgtaggtaatatccaccaatcacaaccagcc--acaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggt 220  Q
    |||||||||||| ||||||||||| ||||||||  ||||||||||| ||| ||||||||||||||| |||||| |||||||||  ||| ||||| |||||    
T  17719401 ttcgtaggtaatgtccaccaatcaaaaccagccacacaccctttatccaacggctttctgcatgtggggccgcagctttcctacaaaaatattcgtcggt 17719302  T
Q  221 aaag 224  Q
    ||||    
T  17719301 aaag 17719298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 17719267 - 17719063
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcc- 273  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||         |||||     
T  17719267 tttctgcatgtggggccgccactttcctaggaaagtattcctcggtaaaggcaaccaatcacaagctgccacaccccgcttttct---------ggtcct 17719177  T
Q  274 ttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaa 373  Q
    ||||||||||| | ||||||| ||| ||||||||  ||| ||||| ||| ||||| ||||||||  ||| ||||||||||||||||||||||||||| ||    
T  17719176 ttttttactgataggtgcttttcgacgaaaattttatcgataattagtaggaaaccactttctaaaaaatttcgtcggaaaattttgtaggaaaatccaa 17719077  T
Q  374 tatttcttgtagtg 387  Q
    ||||||||||||||    
T  17719076 tatttcttgtagtg 17719063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 12768258 - 12768455
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    ||||||||| |||| ||| | ||| ||||||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||  ||||||    
T  12768258 gttgtatatatatatacaaaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccatgttttcctacgaaattttcgtaggtaaattccacc 12768357  T
Q  142 aatcacaacca-gc-cacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcaca 237  Q
    ||||||||||| || |||||||||||| ||| |||| | |||||||| |||||| ||||||||| |||| |||||||||||||||   ||||||||||    
T  12768358 aatcacaaccatgcacacaccctttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaaatattcctcggtaaagtaggccaatcaca 12768455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 12512048 - 12512245
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacgt-aacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||| ||| | ||| ||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||    
T  12512048 gttgtatatttatatacacaaatgctgcaatgttaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcgtaggtaattttcacc 12512147  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcaca 237  Q
    ||||||||||  |  |||||||||||| ||| || | | |||||||| |||||| ||||||||  |||| |||||||||||||||   ||||||||||    
T  12512148 aatcacaaccatacacacaccctttatccaacggatgtgtgcatgtggggccgcagctttcctttgaaaatattcctcggtaaagtaggccaatcaca 12512245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 43 - 260
Target Start/End: Original strand, 4809642 - 4809862
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||| ||| | ||| ||||||| ||||||||  ||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||    
T  4809642 gttgtatatttatatacacaaatgctgcaacggtaacaaacaactagttagcatgtgggtcccgtgttttcctacgaaattttcataggtaatttccacc 4809741  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaag 239  Q
    || |||||||  |  ||||||||| || ||||| || |  ||||||| |||||| ||||||||| |||| |||||||||||||||    ||||||||| |    
T  4809742 aaacacaaccatacacacacccttcatccaatgactgtgagcatgtggggccgcagctttcctacgaaattattcctcggtaaagtagaccaatcacatg 4809841  T
Q  240 ctgccacaccccacttttctg 260  Q
    || |||||| ||| |||||||    
T  4809842 cttccacacaccatttttctg 4809862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 4809937 - 4810151
Alignment:
Q  175 tttctgcatgtgtgg-ccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggt 271  Q
    |||||||||||| || |||||||||||||| |||| ||||||| ||||| | |||||| ||||||||||||||   | |||||||||||| | ||  | |    
T  4809937 tttctgcatgtgggggccgccgctttcctacgaaattattcctaggtaatgtcagccattcacaagctgccacgtgctccacttttctgtccgtagtgct 4810036  T
Q  272 ccttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatct 371  Q
     ||||| ||||||||  || ||||||| ||| ||||||||||||||||||| ||||   |||||||||||| ||| | ||||| |||||||||||||||     
T  4810037 gctttt-tactgacagttgatttccgacgaatatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcataggaaagttttgtaggaaaatca 4810135  T
Q  372 aatatttcttgtagtg 387  Q
    |  |||||||||||||    
T  4810136 acaatttcttgtagtg 4810151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 24859420 - 24859216
Alignment:
Q  175 tttctgcatgtgtgg-ccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggt 271  Q
    |||||||||||| || |||||||||||||| |||| ||||||| ||||||| |||||| ||||||||| ||||   | |||||||||||| |            
T  24859420 tttctgcatgtgggggccgccgctttcctacgaaattattcctaggtaaagtcagccattcacaagcttccacgtgctccacttttctgtcc-------- 24859329  T
Q  272 ccttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatct 371  Q
       |||||||||| |  |||||||||| ||| ||||||||||||||||||| ||||   |||||||||||| ||||| ||||| |||||||||||||||     
T  24859328 ---tttttactgaaagttgctttccgacgaatatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtaggaaaatcc 24859232  T
Q  372 aatatttcttgtagtg 387  Q
    |  |||||||||||||    
T  24859231 accatttcttgtagtg 24859216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 388
Target Start/End: Original strand, 12512408 - 12512504
Alignment:
Q  292 tttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaatatttcttgtagtgc 388  Q
    ||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||||||||| |||||||||| |||| |  ||||||||||||||    
T  12512408 tttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggataatccaccatttcttgtagtgc 12512504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 275 - 387
Target Start/End: Original strand, 12768656 - 12768768
Alignment:
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||||||| |  |||||||||| ||||||||||||| ||||||||| ||||   |||||||||||| ||||| ||||| ||||||||||||||| |      
T  12768656 tttttactgaaagttgctttccgacgaaaatttcgtcggtaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtaggaaaatccaca 12768755  T
Q  375 atttcttgtagtg 387  Q
     ||||||||||||    
T  12768756 ttttcttgtagtg 12768768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 24859600 - 24859507
Alignment:
Q  155 cacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacac 248  Q
    |||||||||||| ||| |||| | |||||||| |||||| ||||||||| |||| |||||||||||||||  ||||||||||| ||| ||||||    
T  24859600 cacaccctttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaaatattcctcggtaaagtaagccaatcacatgcttccacac 24859507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 4809857 - 4809930
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacac 248  Q
    |||||||||||| |||||| |||||||||||||| ||||||| ||||| | |||||||||||| ||| ||||||    
T  4809857 tttctgcatgtggggccgcagctttcctaggaaaatattcctaggtaatgtcagccaatcacatgcttccacac 4809930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 12512263 - 12512311
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaa 223  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||||    
T  12512263 tttctgcatgtggggccgcagctttcctaggaaaatattcctcggtaaa 12512311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 12512332 - 12512382
Alignment:
Q  188 ggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaa 238  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||    
T  12512332 ggccgccgctttcctaggaaattattcctaggtaaagtcagccattcacaa 12512382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 23761611 - 23761414
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  23761611 gttgtatatttatacacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacaaaattttcgtaggtaatttccacc 23761512  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcaca 237  Q
    ||||||||||  |  |||||||||||| ||| || | | |||||||| |||||| |||||||||||||| |||||||||||||||   ||||||||||    
T  23761511 aatcacaaccatacacacaccctttatccaacggttgtgtgcatgtggggccgctgctttcctaggaaaatattcctcggtaaagtaggccaatcaca 23761414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 23827072 - 23826875
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  23827072 gttgtatatttatacacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacaaaattttcgtaggtaatttccacc 23826973  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcaca 237  Q
    ||||||||||  |  |||||||||||| ||| || | | |||||||| |||||| |||||||||||||| |||||||||||||||   ||||||||||    
T  23826972 aatcacaaccatacacacaccctttatccaacggttgtgtgcatgtggggccgctgctttcctaggaaaatattcctcggtaaagtaggccaatcaca 23826875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 23761396 - 23761182
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggtc 272  Q
    |||||| ||||| ||||||||||||||||||||| ||||||| ||||||| || ||| ||||||||||||||   | |||||||||||||||||||  |     
T  23761396 tttctgaatgtggggccgccgctttcctaggaaattattcctaggtaaagtcacccattcacaagctgccacgtgctccacttttctgtgcataacactg 23761297  T
Q  273 cttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatcta 372  Q
     |||||||| ||||  |||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||||||||| ||||||||||||||| |    
T  23761296 tttttttacagacagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggaaaatcca 23761197  T
Q  373 atatttcttgtagtg 387  Q
     ||||||||||||||    
T  23761196 gtatttcttgtagtg 23761182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 23826857 - 23826643
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggtc 272  Q
    |||||| ||||| ||||||||||||||||||||| ||||||| ||||||| || ||| ||||||||||||||   | |||||||||||||||||||  |     
T  23826857 tttctgaatgtggggccgccgctttcctaggaaattattcctaggtaaagtcacccattcacaagctgccacgtgctccacttttctgtgcataacactg 23826758  T
Q  273 cttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatcta 372  Q
     |||||||| ||||  |||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||||||||| ||||||||||||||| |    
T  23826757 tttttttacagacagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaagttttgtaggaaaatcca 23826658  T
Q  373 atatttcttgtagtg 387  Q
     ||||||||||||||    
T  23826657 gtatttcttgtagtg 23826643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0624 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 2433 - 2230
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcct 274  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||         ||||||    
T  2433 tttctgcatgtgtggccgctgctttcctaggaaagtattcctcgataaaagcagccaatcacaagctgccacgccccacttttct---------ggtcct 2343  T
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||| | ||| ||||||||| | |||||||||||||||||||||||  ||||   ||||||||||| ||||||| ||| ||||||||||||||  |||    
T  2342 tttttaataacatgtgctttcctacgaaaatttcgtcgctaattcgtagaaaacctttttctaggaaatttcgtcgaaaatttttgtaggaaaattcaat 2243  T
Q  375 atttcttgtagtg 387  Q
    |||||||||||||    
T  2242 atttcttgtagtg 2230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0624; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 2617 - 2466
Alignment:
Q  73 cgtaacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccaccaatcacaaccagc--cacaccctttattcaa 170  Q
    ||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||| ||  |||    
T  2617 cgtaacaaacgactagttagaatgtgggtcctgtgttttccgacgaaattttcgtaggtaatgtccaccaatcacaaccagctacacaccctatacccaa 2518  T
Q  171 tggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaa 222  Q
     |||||||||||| || |||||| ||||| |||||||| ||||| |||||||    
T  2517 cggctttctgcatatggggccgcagcttttctaggaaaatattcgtcggtaa 2466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 28502651 - 28502854
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcct 274  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||          |||||    
T  28502651 tttctgcatgtggggccgctgctttcctaggaaagtattcctcggtaaaatcagccaatcacaagctgccacgccccacttttctt---------gtcct 28502741  T
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||||||||| ||||||||| | ||||||||||||||||||| ||| |||||   ||||||||||| |||||||||||  |||||||||||||  |||    
T  28502742 tttttactgacatgtgctttcctacgaaaatttcgtcgctaatttgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaat 28502841  T
Q  375 atttcttgtagtg 387  Q
    |||||||||||||    
T  28502842 atttcttgtagtg 28502854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 28510209 - 28510412
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcct 274  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||          |||||    
T  28510209 tttctgcatgtggggccgctgctttcctaggaaagtattcctcggtaaaatcagccaatcacaagctgccacgccccacttttctt---------gtcct 28510299  T
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||||||||| ||||||||| | ||||||||||||||||||| ||| |||||   ||||||||||| |||||||||||  |||||||||||||  |||    
T  28510300 tttttactgacatgtgctttcctacgaaaatttcgtcgctaatttgtaggaaacctttttctaggaaatttcgtcggaaatctttgtaggaaaattcaat 28510399  T
Q  375 atttcttgtagtg 387  Q
    |||||||||||||    
T  28510400 atttcttgtagtg 28510412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 18758042 - 18757868
Alignment:
Q  9 gaagaatatagagtaaagaaaatgtgagtgaagagttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtg 107  Q
    |||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||      |||||||||||    
T  18758042 gaagaaaatagagtgaagaaaatgcgagtgaggagttgtatatttatacacagagatgctgcaacggtaacaaacggctagtt------tgggtcccgtg 18757949  T
Q  108 tttttcgacgaaattttcgtaggtaatatccaccaatcacaaccagcc--acaccctttattcaatggctttctgcatgtg 186  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  18757948 ttttccgacgaaattttcataggtaatttccaccaatcacaaccagccacacaccctttattcaacggctttctgcatgtg 18757868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 27907153 - 27907361
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  27907153 gttgtatatttatagacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcttaggtaatttccacc 27907252  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaag 239  Q
    ||||||||||  |  ||||| |||||| ||| || | | |||||| | |||||| |||||||||||||| ||||||||||||||||   ||||||||| |    
T  27907253 aatcacaaccatacacacacgctttatccaacggttgtgtgcatgcggggccgcagctttcctaggaaaatattcctcggtaaaggagcccaatcacatg 27907352  T
Q  240 ctgccacac 248  Q
    || ||||||    
T  27907353 cttccacac 27907361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 27953572 - 27953780
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  27953572 gttgtatatttatagacacagatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcttaggtaatttccacc 27953671  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaag 239  Q
    ||||||||||  |  ||||| |||||| ||| || | | |||||| | |||||| |||||||||||||| ||||||||||||||||   ||||||||| |    
T  27953672 aatcacaaccatacacacacgctttatccaacggttgtgtgcatgcggggccgcagctttcctaggaaaatattcctcggtaaaggagcccaatcacatg 27953771  T
Q  240 ctgccacac 248  Q
    || ||||||    
T  27953772 cttccacac 27953780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 27894914 - 27895122
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||| ||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  27894914 gttgtatatttataaacacaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcttaggtaatttccacc 27895013  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaag 239  Q
    ||||||||||  |  ||||| |||||| ||| || | | |||||| | |||||| |||||||||||||| ||||||||||||||||   ||||||||| |    
T  27895014 aatcacaaccatacacacacgctttatccaacggttgtgtgcatgcggggccgcagctttcctaggaaaatattcctcggtaaaggagcccaatcacatg 27895113  T
Q  240 ctgccacac 248  Q
    || ||||||    
T  27895114 cttccacac 27895122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 276 - 387
Target Start/End: Complemental strand, 18757715 - 18757604
Alignment:
Q  276 ttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaata 375  Q
    ||||||||||| ||||||||| | ||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  18757715 ttttactgacaggtgctttccaacgaaaatttcgtcgctaatttgtaggaaactactttctaagaaatttcgtcggaaaattttgtaggaaaatccaata 18757616  T
Q  376 tttcttgtagtg 387  Q
    ||||||| ||||    
T  18757615 tttcttgcagtg 18757604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 18757786 - 18757716
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgcca 245  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18757786 tttctgcatgtggggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgcca 18757716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 388
Target Start/End: Original strand, 27895129 - 27895326
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggtc 272  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||||||   | |||||||||||| ||||| | |     
T  27895129 tttctgcaagtggggccgccgctttcctaggaaattattcctcggtaaagtcagtcattcacaagctgccacgtgctccacttttctgttcataatgtt- 27895227  T
Q  273 cttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatcta 372  Q
                     | ||||||| |||||||||||||| |||||||| ||||    ||||||||||| ||||||||||| ||||||||||||||| |    
T  27895228 -----------------gttttccgacgaaaatttcgtcgcaaattcgtaggaaaacggtttctaggaaatttcgtcggaaagttttgtaggaaaatcca 27895310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 388
Target Start/End: Original strand, 27907368 - 27907565
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggtc 272  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||||||   | |||||||||||| ||||| | |     
T  27907368 tttctgcaagtggggccgccgctttcctaggaaattattcctcggtaaagtcagtcattcacaagctgccacgtgctccacttttctgttcataatgtt- 27907466  T
Q  273 cttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatcta 372  Q
                     | ||||||| |||||||||||||| |||||||| ||||    ||||||||||| ||||||||||| ||||||||||||||| |    
T  27907467 -----------------gttttccgacgaaaatttcgtcgcaaattcgtaggaaaacggtttctaggaaatttcgtcggaaagttttgtaggaaaatcca 27907549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 388
Target Start/End: Original strand, 27953787 - 27953984
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggtc 272  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||||||   | |||||||||||| ||||| | |     
T  27953787 tttctgcaagtggggccgccgctttcctaggaaattattcctcggtaaagtcagtcattcacaagctgccacgtgctccacttttctgttcataatgtt- 27953885  T
Q  273 cttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatcta 372  Q
                     | ||||||| |||||||||||||| |||||||| ||||    ||||||||||| ||||||||||| ||||||||||||||| |    
T  27953886 -----------------gttttccgacgaaaatttcgtcgcaaattcgtaggaaaacggtttctaggaaatttcgtcggaaagttttgtaggaaaatcca 27953968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 28502385 - 28502475
Alignment:
Q  34 gagtgaagagttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtagg 130  Q
    |||||||||||||||||||||||       ||| ||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||    
T  28502385 gagtgaagagttgtatatttata-------atgctgcaacggtaacaaacgactagttagaatgtgggtcccgtgttttccgacgaaattttcgtagg 28502475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 28509943 - 28510033
Alignment:
Q  34 gagtgaagagttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtagg 130  Q
    |||||||||||||||||||||||       ||| ||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||    
T  28509943 gagtgaagagttgtatatttata-------atgctgcaacggtaacaaacgactagttagaatgtgggtcccgtgttttccgacgaaattttcgtagg 28510033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 28502488 - 28502538
Alignment:
Q  172 ggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaa 222  Q
    ||||||||||||||| |||||| |||||||||||||| ||||| |||||||    
T  28502488 ggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaa 28502538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 28510046 - 28510096
Alignment:
Q  172 ggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaa 222  Q
    ||||||||||||||| |||||| |||||||||||||| ||||| |||||||    
T  28510046 ggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaa 28510096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 18757869 - 18757817
Alignment:
Q  171 tggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaag 224  Q
    |||||||||||||||| |||||| |||||||||||||| ||||| |||||||||    
T  18757869 tggctttctgcatgtggggccgcggctttcctaggaaa-tattcgtcggtaaag 18757817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 24688813 - 24688997
Alignment:
Q  34 gagtgaagagttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggta 132  Q
    |||||||||||||||||||||||       ||| ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  24688813 gagtgaagagttgtatatttata-------atgctgcaacggtaacaaacggctagttagaatgtgggtcccgtgttttccgacgaaattttcgtaggta 24688905  T
Q  133 atatccaccaatcacaaccagc--cacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaa 222  Q
    || |||||||||||||||||||  |||||||| ||| ||| ||||||||||||||| |||||| |||||||||||||| ||||| |||||||    
T  24688906 atttccaccaatcacaaccagccacacaccctatatccaacggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaa 24688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 24689030 - 24689233
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcct 274  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||         ||||||    
T  24689030 tttctgcatgtggggccgctgctttcctaggaaagtattcctcggtaaaagcagccaatcacaagctggcacgccccacttttct---------ggtcct 24689120  T
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||||||||| ||||||||| | |||| |||||| | ||||||||| |||||   || |||||||| |||||||||||  |||||||||||||  |||    
T  24689121 tttttactgacatgtgctttcctacgaaagtttcgtaggtaattcgtaggaaaccctttcctaggaaatttcgtcggaaatctttgtaggaaaattcaat 24689220  T
Q  375 atttcttgtagtg 387  Q
    |||||||||||||    
T  24689221 atttcttgtagtg 24689233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 7410473 - 7410670
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    ||||||||| |||| ||| | ||| ||||||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||  ||||||    
T  7410473 gttgtatatatatatacaaaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccatgttttcctacgaaattttcgtaggtaaattccacc 7410572  T
Q  142 aatcacaacca-gc-cacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcaca 237  Q
    ||||||||||| || |||||||||||| ||| |||| | |||||||| |||||| ||||||||| |||| |||||||||||||||   ||||||||||    
T  7410573 aatcacaaccatgcacacaccctttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaaatattcctcggtaaagtaggccaatcaca 7410670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 387
Target Start/End: Original strand, 24678523 - 24678641
Alignment:
Q  269 ggtccttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaa 368  Q
    |||||||||||||||||| ||||||||| | |||| |||||| | ||||||||| |||||   || |||||||| ||||||| |||  ||||||||||||    
T  24678523 ggtccttttttactgacatgtgctttcctacgaaagtttcgtaggtaattcgtaggaaaccctttcctaggaaatttcgtcgaaaatctttgtaggaaaa 24678622  T
Q  369 tctaatatttcttgtagtg 387  Q
    |  ||||||||||||||||    
T  24678623 ttcaatatttcttgtagtg 24678641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 275 - 387
Target Start/End: Original strand, 7410871 - 7410983
Alignment:
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||||||| |  |||||||||| ||||||||||||| ||||||||| ||||   |||||||||||| ||||| ||||| ||||||||||||||| |      
T  7410871 tttttactgaaagttgctttccgacgaaaatttcgtcggtaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtaggaaaatccaca 7410970  T
Q  375 atttcttgtagtg 387  Q
     ||||||||||||    
T  7410971 ttttcttgtagtg 7410983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 43 - 248
Target Start/End: Complemental strand, 7164 - 6956
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  7164 gttgtatatttatacacacagatgttgcaacggtaacaaacggctagttaacatgtgggtcccgtgttttccgacgaaatttttgtaggtaatttccacc 7065  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaag 239  Q
    ||||||||||  |  |||||||||||| ||| || | | |||||||| ||||||  ||||||||| ||| |||||||||||||||   |||||||||| |    
T  7064 aatcacaaccatacacacaccctttatccaaaggttgtgtgcatgtggggccgcaactttcctagaaaaatattcctcggtaaagtaggccaatcacatg 6965  T
Q  240 ctgccacac 248  Q
    || ||||||    
T  6964 cttccacac 6956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 175 - 387
Target Start/End: Complemental strand, 6949 - 6736
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggtc 272  Q
    |||||| ||||| |||||| |||||||||||||| ||||||||||||||| || ||| |||||||||||| |   | |||||||| ||||||||||| |     
T  6949 tttctgaatgtggggccgctgctttcctaggaaattattcctcggtaaagtcacccattcacaagctgccccgtgctccacttttttgtgcataacgctg 6850  T
Q  273 cttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatcta 372  Q
    |||||| |||||||  |||||||||| |||| |||||||||||||||||| |||||  ||||| |||||| ||||||| ||| ||||||||||||||| |    
T  6849 cttttt-actgacagttgctttccgacgaaattttcgtcgctaattcgtaggaaaccgctttccaggaaatttcgtcgaaaagttttgtaggaaaatcaa 6751  T
Q  373 atatttcttgtagtg 387  Q
     || |||||| ||||    
T  6750 gtaattcttgcagtg 6736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 43 - 248
Target Start/End: Complemental strand, 23741162 - 23740954
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||| ||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||    
T  23741162 gttgtatatttatatacacaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcgtaggtaaattccacc 23741063  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaag 239  Q
    ||||||||||  |  |||||||||||| ||| |||| | |||||||| |||||| ||||||||| |||| ||||||||||||| |   |||||||||| |    
T  23741062 aatcacaaccatacacacaccctttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaattattcctcggtaatgtaggccaatcacatg 23740963  T
Q  240 ctgccacac 248  Q
    || ||||||    
T  23740962 cttccacac 23740954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 43 - 248
Target Start/End: Complemental strand, 40065011 - 40064803
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||| ||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  40065011 gttgtatatttatatacacaaatgctgcaacggtaacaaacggctagttagcatgtgggtcccgtgttttccgacaaaattttcgtaggtaatttccacc 40064912  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaag 239  Q
    ||||||||||  |  ||||||| |||| ||| |||| | |||||||| |||||| ||||||||| |||| |||||||||||||||   |||||||||| |    
T  40064911 aatcacaaccatacacacaccccttatccaacggctgtgtgcatgtggggccgcagctttcctacgaaaatattcctcggtaaagtaggccaatcacatg 40064812  T
Q  240 ctgccacac 248  Q
    || ||||||    
T  40064811 cttccacac 40064803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 38850831 - 38851034
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcct 274  Q
    |||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| ||| | ||||||||||         ||| ||    
T  38850831 tttctgcatgtggggccgctgctttcctaggaaagtatttctcggtaaaagcagccaatcacaagctggcacgctccacttttct---------ggttct 38850921  T
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||| ||||| ||||||||| | ||||||||||||||||||||||| ||||    ||| ||||||| |||||||||||  |||||||||||||  |||    
T  38850922 tttttattgacatgtgctttcctacgaaaatttcgtcgctaattcgtaggaaatctttttttaggaaatttcgtcggaaatctttgtaggaaaattcaat 38851021  T
Q  375 atttcttgtagtg 387  Q
    |||||||||||||    
T  38851022 atttcttgtagtg 38851034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 38850614 - 38850798
Alignment:
Q  34 gagtgaagagttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggta 132  Q
    |||||||||||||||||||||||       ||| ||||||| ||||||||| |||||||| ||| |||||||||||||| |||| |||||||||||||||    
T  38850614 gagtgaagagttgtatatttata-------atgctgcaacggtaacaaacgactagttagaatgcgggtcccgtgttttccgactaaattttcgtaggta 38850706  T
Q  133 atatccaccaatcacaaccagcc--acaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaa 222  Q
    || ||||||||||||||||||||  | ||||| ||| ||| ||||||||||||||| |||||| |||||||||||||| ||||| |||||||    
T  38850707 atttccaccaatcacaaccagccatataccctatatccaacggctttctgcatgtggggccgcagctttcctaggaaaatattcgtcggtaa 38850798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 188 - 387
Target Start/End: Complemental strand, 23740852 - 23740652
Alignment:
Q  188 ggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggtcct--tttttactg 283  Q
    |||||||||||||||| |||| ||||||| ||||||| |||||| ||||||||||||||   | ||||||||||||  |||   || ||  |||||||||    
T  23740852 ggccgccgctttcctacgaaattattcctaggtaaagtcagccattcacaagctgccacgtgctccacttttctgtctata---gtactgttttttactg 23740756  T
Q  284 acaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaatatttcttgt 383  Q
      |  |||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||| ||||||||||||||||||||| |  |||||||||    
T  23740755 gaagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaaattttgtaggaaaatccaccatttcttgt 23740656  T
Q  384 agtg 387  Q
    ||||    
T  23740655 agtg 23740652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 370
Target Start/End: Complemental strand, 40064646 - 40064551
Alignment:
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatc 370  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||||||||| |||||||||||||||    
T  40064646 tttttactgacatttgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtcggaaacttttgtaggaaaatc 40064551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 233 - 387
Target Start/End: Complemental strand, 35336611 - 35336457
Alignment:
Q  233 tcacaagctgccacaccccacttttctgtgcataacggtccttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactact 332  Q
    |||||| ||||||| |||||| ||| |||| |||| |||||  ||| ||||||| ||| ||||||| ||| ||||||||||||||||||| ||||| |      
T  35336611 tcacaaactgccacgccccacctttttgtgtataagggtcccctttgactgacatgtgttttccgacgaatatttcgtcgctaattcgtaggaaacaaac 35336512  T
Q  333 ttctaggaaacttcgtcggaaaattttgtaggaaaatctaatatttcttgtagtg 387  Q
    | |||||||| ||| ||||||| ||| |||| |||||| ||||||||||||||||    
T  35336511 tcctaggaaatttcctcggaaagtttagtagaaaaatccaatatttcttgtagtg 35336457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 40064716 - 40064647
Alignment:
Q  175 tttctgcatgtgtgg-ccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgc 243  Q
    |||||||||||| || ||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||    
T  40064716 tttctgcatgtgggggccgccgctttcctaggaaattattcctaggtaaagtcagccattcacaagctgc 40064647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 40064792 - 40064723
Alignment:
Q  179 tgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacac 248  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||    |||||||||| ||| ||||||    
T  40064792 tgcatgtggggccgcagctttcctaggaaaatattcctcggtaaattaggccaatcacatgcttccacac 40064723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 22 - 225
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcct 274  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||         | ||||    
T  22 tttctgcatgtggggccgctgctttcctaggaaagtattcctcggtaaaagcagccaatcacaagctggcacgccccacttttct---------gatcct 112  T
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaat 374  Q
    |||||||||||| ||||||||| | |||| |||||| | ||||||||| |||||   || |||||||| |||||||||||  |||||||||||||  |||    
T  113 tttttactgacatgtgctttcctacgaaagtttcgtagataattcgtaggaaaccctttcctaggaaatttcgtcggaaatctttgtaggaaaattcaat 212  T
Q  375 atttcttgtagtg 387  Q
    |||||||||||||    
T  213 atttcttgtagtg 225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 54957004 - 54957156
Alignment:
Q  74 gtaacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccaccaatcacaaccag--ccacaccctttattcaat 171  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||   |||||||||||| |||     
T  54957004 gtaacaaacggctagttagcatgtgggtcccgtgttttccgacgaaattttcgtaggtaaattccaccaatcacaaccagacacacaccctttatccaac 54957103  T
Q  172 ggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaag 224  Q
    |||| | |||||| | |||||| ||||||||| |||| |||||||||||||||    
T  54957104 ggctgtgtgcatgcggggccgcagctttcctacgaaaatattcctcggtaaag 54957156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 52480548 - 52480745
Alignment:
Q  43 gttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtgtttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||||||||||| ||| | ||| ||||||| |||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||  ||||||    
T  52480548 gttgtatatttatatacacaaatgctgcaacggtaacaaactgctagttagcatgtgggtctcgtgttttccgacgaaattttcgtaggtaaattccacc 52480647  T
Q  142 aatcacaacc--agccacaccctttattcaatggctttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcaca 237  Q
    ||||| ||||  |  |||||||||||| ||| |||| | |||||||| || ||| ||||||||| |||| |||||||||||||||   ||||||||||    
T  52480648 aatcaaaaccatacacacaccctttatccaacggctgtgtgcatgtggggtcgcagctttcctacgaaaatattcctcggtaaagtaggccaatcaca 52480745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 22326708 - 22326580
Alignment:
Q  175 tttctgcatgtgtggccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccacaccccacttttctgtgcataacggtcct 274  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||         ||||||    
T  22326708 tttctgcatgtggggccgccgctttcctaggaaagtattcctcggtaaaagcagccaatcacaagctgccacgccccacttttct---------ggtcct 22326618  T
Q  275 tttttactgacaagtgctttccgatgaaaatttcgtcg 312  Q
    |||||||||||| ||||||||| | |||||||||||||    
T  22326617 tttttactgacatgtgctttcctacgaaaatttcgtcg 22326580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 22326931 - 22326805
Alignment:
Q  9 gaagaatatagagtaaagaaaatgtgagtgaagagttgtatatttatacacagagatgatgcaacg-taacaaacggctagttagcatgtgggtcccgtg 107  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||       ||| ||||||| |||||||||||||||||| ||||||||||||||    
T  22326931 gaagaaaatagagtgaagaaaatgtgagtgaagagttgtatatttata-------atgctgcaacggtaacaaacggctagttagaatgtgggtcccgtg 22326839  T
Q  108 tttttcgacgaaattttcgtaggtaatatccacc 141  Q
    |||||| | |||||||||||||||||| ||||||    
T  22326838 tttttctaggaaattttcgtaggtaatgtccacc 22326805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 52480843 - 52481057
Alignment:
Q  175 tttctgcatgtgtgg-ccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggt 271  Q
    |||||||||||| || |||||||||||||| |||| ||||||| ||||||| |||||| | ||||||||||||   | ||||||||||||  |||   ||    
T  52480843 tttctgcatgtgggggccgccgctttcctacgaaattattcctaggtaaagtcagccatttacaagctgccacgtgctccacttttctgtctata---gt 52480939  T
Q  272 cct--tttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaat 369  Q
     ||  |||||||||| |  |||||||||| ||||||||||||||||||||||| ||||   |||||||||||| ||||| ||||| |||| |||||||||    
T  52480940 actgttttttactgaaagttgctttccgacgaaaatttcgtcgctaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttctaggaaaat 52481039  T
Q  370 ctaatatttcttgtagtg 387  Q
    | |  |||||||||||||    
T  52481040 ccaccatttcttgtagtg 52481057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 175 - 387
Target Start/End: Original strand, 54957248 - 54957462
Alignment:
Q  175 tttctgcatgtgtgg-ccgccgctttcctaggaaagtattcctcggtaaaggcagccaatcacaagctgccaca--ccccacttttctgtgcataacggt 271  Q
    |||||||||||| || |||||||||| ||| |||| ||||||| ||||||| |||||| ||||||||||||||   | |||||||||||| |||| |  |    
T  54957248 tttctgcatgtgggggccgccgcttttctacgaaattattcctaggtaaagtcagccattcacaagctgccacgtgctccacttttctgtccatagcatt 54957347  T
Q  272 ccttttttactgacaagtgctttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatct 371  Q
      ||||||||||| |  |||||||||| ||| ||||||||||||||| ||| ||||   |||||||| ||| ||||| ||||| |||||||||||||||     
T  54957348 g-ttttttactgaaagttgctttccgacgaatatttcgtcgctaatttgtaggaaaacgctttctagaaaatttcgtaggaaagttttgtaggaaaatcc 54957446  T
Q  372 aatatttcttgtagtg 387  Q
    |  |||| ||||||||    
T  54957447 accattttttgtagtg 54957462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1414 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 1 - 95
Alignment:
Q  293 ttccgatgaaaatttcgtcgctaattcgtatgaaactactttctaggaaacttcgtcggaaaattttgtaggaaaatctaatatttcttgtagtg 387  Q
    |||||| ||||||||||||| ||||||||| ||||   |||||||||||| ||||| ||||| ||||||||||||||| |   ||||||||||||    
T  1 ttccgacgaaaatttcgtcggtaattcgtaggaaaacgctttctaggaaatttcgtaggaaagttttgtaggaaaatccacattttcttgtagtg 95  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University