View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14763_high_7 (Length: 237)
Name: NF14763_high_7
Description: NF14763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14763_high_7 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 7006407 - 7006188
Alignment:
| Q |
18 |
gtattacctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttggtctttttggtaactgggaaagcagctgaggatttgag |
117 |
Q |
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| T |
7006407 |
gtattacctgcatacagttcactcttccaccattgcttgtgatggaggtaatgtcattgttggtcttcttggtcactgggaaaccagctgaggatttgag |
7006308 |
T |
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| Q |
118 |
accgatgaatggagcaaccaagttggcggagacgcggttaacggtggcgacagaggcggaggagatcaaagccatttttcctactccttcttagttcacc |
217 |
Q |
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| T |
7006307 |
accggtgaatggagcaaccaagttagcggagacgcggttaacggtggtgacagcggcggaggagatcaaagccatttttcctactccttcttagttcacc |
7006208 |
T |
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| Q |
218 |
aagtactcaacttttgcttc |
237 |
Q |
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| T |
7006207 |
aagtactcaacttttgcttc |
7006188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 7009488 - 7009362
Alignment:
| Q |
18 |
gtattacctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttggtctttttggtaactgggaaagcagctgaggatttgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7009488 |
gtattacctgcatacagttcactcttccaccattgcttgcaatggaggtaatgtcattgttggtctttttggtaactgggaaagcagctgaggatttgag |
7009389 |
T |
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| Q |
118 |
accgatgaatggagcaaccaagttggc |
144 |
Q |
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| T |
7009388 |
accggtgaatggggcaaccaagttggc |
7009362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 1393785 - 1393729
Alignment:
| Q |
23 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
79 |
Q |
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| T |
1393785 |
acctgcatgcagtttactcttccaccattgcttgtaatggaggtaatgtctttgttg |
1393729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 1350174 - 1350118
Alignment:
| Q |
23 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
79 |
Q |
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| T |
1350174 |
acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg |
1350118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 1358129 - 1358073
Alignment:
| Q |
23 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
79 |
Q |
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|||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||| |
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| T |
1358129 |
acctgcatgcagtttactcttccaccattgcttgtaatagaggtaatgtccttgttg |
1358073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 1373472 - 1373416
Alignment:
| Q |
23 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
79 |
Q |
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|||||||| ||||| |||||||| |||||||||| || |||||||||||| |||||| |
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| T |
1373472 |
acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg |
1373416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 1383748 - 1383693
Alignment:
| Q |
23 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgtt |
78 |
Q |
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|||||||| ||||| ||||||||||||||||||| || ||| |||||||| ||||| |
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| T |
1383748 |
acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt |
1383693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 1389853 - 1389798
Alignment:
| Q |
23 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgtt |
78 |
Q |
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|||||||| ||||| ||||||||||||||||||| || ||| |||||||| ||||| |
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| T |
1389853 |
acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt |
1389798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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