View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14763_low_2 (Length: 450)

Name: NF14763_low_2
Description: NF14763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14763_low_2
NF14763_low_2
[»] chr7 (8 HSPs)
chr7 (103-324)||(13416434-13416632)
chr7 (321-435)||(13416657-13416771)
chr7 (342-426)||(1985722-1985806)
chr7 (320-430)||(15571643-15571753)
chr7 (47-108)||(21811662-21811723)
chr7 (337-430)||(14076859-14076952)
chr7 (337-430)||(14386887-14386980)
chr7 (45-105)||(33651298-33651358)
[»] chr6 (5 HSPs)
chr6 (320-406)||(6954264-6954350)
chr6 (320-422)||(6942712-6942814)
chr6 (320-430)||(6921095-6921205)
chr6 (346-430)||(6947603-6947687)
chr6 (112-210)||(6934717-6934818)
[»] scaffold0354 (1 HSPs)
scaffold0354 (321-430)||(7675-7784)
[»] chr3 (1 HSPs)
chr3 (47-103)||(18088189-18088245)
[»] scaffold0002 (1 HSPs)
scaffold0002 (47-102)||(406301-406356)
[»] chr1 (1 HSPs)
chr1 (47-102)||(15629403-15629458)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 103 - 324
Target Start/End: Original strand, 13416434 - 13416632
Alignment:
Q  103 ggatgctattgaactattgattatggcatgagcatagagatttatatcatagtaccatagacaaagctcaaaattaggatagtaaataaaattaaagaaa 202  Q
    ||||||||||||||||||||||||||||| ||     |||||||||||||||||||||| |||||||||||||||||                  |||||    
T  13416434 ggatgctattgaactattgattatggcatcag-----agatttatatcatagtaccatacacaaagctcaaaattag------------------agaaa 13416510  T
Q  203 tgcatagcagctaataatcacaattcactactagataatcgtgcaacaatataatcaaccagatgaaaccttgatatgaaaataatcacacaattcattg 302  Q
    ||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||| || ||||||||||    
T  13416511 tgcttagcagctaataatcacagttcactactagataatcttgcaacaatataattaaccaaatcaaaccatgatatgaaaataattacccaattcattg 13416610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 321 - 435
Target Start/End: Original strand, 13416657 - 13416771
Alignment:
Q  321 aaaacatactttcatgaagtggataccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattcttttaactctattat 420  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| || ||||||||||    
T  13416657 aaaacatactttcttgaagtcgataccaagctttcaacatatcccttggcgtcgaaccaccaaatttgattgggacttttaattctctttactctattat 13416756  T
Q  421 ctctccaattgtagt 435  Q
    |||||| ||||||||    
T  13416757 ctctcctattgtagt 13416771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 426
Target Start/End: Original strand, 1985722 - 1985806
Alignment:
Q  342 gataccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattcttttaactctattatctctcc 426  Q
    ||||||||||||||||| |||||||||||    |||||| ||| |  ||||||||||||||||||||  ||||||||||||||||    
T  1985722 gataccaagctttcaacgtatcccttggcactgaaccacaaaattctattggtacttttaattctttctactctattatctctcc 1985806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 430
Target Start/End: Original strand, 15571643 - 15571753
Alignment:
Q  320 aaaaacatactttcatgaagtggataccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattcttttaactctatta 419  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||| |||| |   |||| |  | ||  ||| ||||||||||||| || |||||||||    
T  15571643 aaaaacttactttcaggaagtcgataccaagctttcaacatatcccctggcattggaccaacggatttttttgttacttttaattctctttactctatta 15571742  T
Q  420 tctctccaatt 430  Q
    | |||||||||    
T  15571743 tatctccaatt 15571753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 21811723 - 21811662
Alignment:
Q  47 ctaacttacaaatataaaggcctaatgacttaaacccaataatttattatctaacaggatgc 108  Q
    ||||||||| ||||||||||||||||  |||||||||||||  ||||||||||||| |||||    
T  21811723 ctaacttactaatataaaggcctaatagcttaaacccaatacattattatctaacatgatgc 21811662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 14076952 - 14076859
Alignment:
Q  337 aagtggataccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattcttttaactctattatctctccaatt 430  Q
    |||| ||||||||||||||||||||   |||||  |  |||||| ||| |  ||||||| |||||||||| || ||||||||||||||||||||    
T  14076952 aagtcgataccaagctttcaacataattcttggaatgcaaccacaaaattctattggtatttttaattctctttactctattatctctccaatt 14076859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 14386980 - 14386887
Alignment:
Q  337 aagtggataccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattcttttaactctattatctctccaatt 430  Q
    |||| ||||||||||||||||||||   |||||  |  |||||| ||| |  ||||||| |||||||||| || ||||||||||||||||||||    
T  14386980 aagtcgataccaagctttcaacataattcttggaatgcaaccacaaaattctattggtatttttaattctctttactctattatctctccaatt 14386887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 33651358 - 33651298
Alignment:
Q  45 gactaacttacaaatataaaggcctaatgacttaaacccaataatttattatctaacagga 105  Q
    ||||||| || ||||| ||||||| |||  ||||| ||||||||||| |||||||||||||    
T  33651358 gactaacctaaaaatacaaaggcccaatagcttaagcccaataatttgttatctaacagga 33651298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 6954264 - 6954350
Alignment:
Q  320 aaaaacatactttcatgaagtggataccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattct 406  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||  |  ||||||||| || ||||||||||||||||||    
T  6954264 aaaaacatactttcaagaagtcgataccaagctttcaacatatcccttggcagcggaccaccaaattttattggtacttttaattct 6954350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 320 - 422
Target Start/End: Original strand, 6942712 - 6942814
Alignment:
Q  320 aaaaacatactttcatgaagtggataccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattcttttaactctatta 419  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||||||||     ||||||||| || |||||||||||||||||| ||  ||||||||    
T  6942712 aaaaacttactttcaagaagttgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtacttttaattctctttgctctatta 6942811  T
Q  420 tct 422  Q
    |||    
T  6942812 tct 6942814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 430
Target Start/End: Original strand, 6921095 - 6921205
Alignment:
Q  320 aaaaacatactttcatgaagtggataccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattcttttaactctatta 419  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||||||||    |||||| ||| || ||||||||||| |||| | ||  ||||||||    
T  6921095 aaaaacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtgaaccacaaaattttattggtactttcaattatctttgctctatta 6921194  T
Q  420 tctctccaatt 430  Q
    ||| |||||||    
T  6921195 tctttccaatt 6921205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 430
Target Start/End: Original strand, 6947603 - 6947687
Alignment:
Q  346 ccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattcttttaactctattatctctccaatt 430  Q
    ||||||||||||||||||| |||||    |||||| ||| ||  ||||||||||||||||| || ||||||||||||||||||||    
T  6947603 ccaagctttcaacatatccattggcactgaaccacaaaattttgttggtacttttaattctctttactctattatctctccaatt 6947687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 6934717 - 6934818
Alignment:
Q  112 tgaactattgattatggcatgagcatagagatttatatcatagtaccatagaca---aagctcaaaattaggatagtaaataaaattaaagaaatgcata 208  Q
    ||||||||| ||| |||||||||| |||| ||||||| ||| |||||||| |||   |||||||||| ||  |||||||||||||| |||||||| ||||    
T  6934717 tgaactattaattttggcatgagcttagaaatttataccattgtaccatacacataaaagctcaaaactataatagtaaataaaatcaaagaaattcata 6934816  T
Q  209 gc 210  Q
    ||    
T  6934817 gc 6934818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 430
Target Start/End: Complemental strand, 7784 - 7675
Alignment:
Q  321 aaaacatactttcatgaagtggataccaagctttcaacatatcccttggcgtctaaccaccaaacttgattggtacttttaattcttttaactctattat 420  Q
    ||||||||| |||| ||||| | |||||||||||| |||||||||||||| |  ||||||  || ||||||||||||||||||||| || ||||||||||    
T  7784 aaaacataccttcaagaagtcggtaccaagctttctacatatcccttggcattgaaccacggaatttgattggtacttttaattctatttactctattat 7685  T
Q  421 ctctccaatt 430  Q
    ||||| ||||    
T  7684 ctctcaaatt 7675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 18088189 - 18088245
Alignment:
Q  47 ctaacttacaaatataaaggcctaatgacttaaacccaataatttattatctaacag 103  Q
    ||||||||| ||||||||||||||||  ||||| ||||||| ||||||||| |||||    
T  18088189 ctaacttactaatataaaggcctaatagcttaagcccaatactttattatccaacag 18088245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 406301 - 406356
Alignment:
Q  47 ctaacttacaaatataaaggcctaatgacttaaacccaataatttattatctaaca 102  Q
    ||||||| | |||||||||||| ||| ||||||||| |||| ||||||||||||||    
T  406301 ctaacttgctaatataaaggcccaataacttaaacctaatactttattatctaaca 406356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 15629403 - 15629458
Alignment:
Q  47 ctaacttacaaatataaaggcctaatgacttaaacccaataatttattatctaaca 102  Q
    ||||||||| |||||||||| | ||| |||||| ||||||| ||||||||||||||    
T  15629403 ctaacttactaatataaaggtccaataacttaagcccaatattttattatctaaca 15629458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University