View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14763_low_3 (Length: 436)

Name: NF14763_low_3
Description: NF14763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14763_low_3
NF14763_low_3
[»] chr6 (1 HSPs)
chr6 (244-337)||(8158049-8158142)
[»] chr3 (1 HSPs)
chr3 (26-143)||(4085576-4085691)
[»] chr8 (3 HSPs)
chr8 (29-95)||(44318073-44318139)
chr8 (48-96)||(43897378-43897426)
chr8 (29-95)||(44307918-44307981)
[»] chr4 (1 HSPs)
chr4 (26-96)||(18703060-18703130)


Alignment Details
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 8158142 - 8158049
Alignment:
Q  244 gaaggagtgttaaaattattattcactactggagttaatgtgtccttaaggcttcatatataagacgttccgacttcatgcattgaataccatg 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8158142 gaaggagtgttaaaattattattcactactggagttaatgtgtccttaaggcttcatatataagacgttccgacttcatgcattgaataccatg 8158049  T

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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 4085576 - 4085691
Alignment:
Q  26 gaggaggagcgtacggtggagtagagaaggcgtggtatggaggactttatgaagaaacgattcatggcggctggaggaggggtttgatagaagctgcggt 125  Q
    |||||||||||||||||||||||||||||  |||| | ||||| | ||  ||| |||||||||||||||||   |||||||||||||| |||||||||||    
T  4085576 gaggaggagcgtacggtggagtagagaagttgtggcaaggaggtccttgcgaaaaaacgattcatggcggca--aggaggggtttgatggaagctgcggt 4085673  T
Q  126 gtagttagttccgttttt 143  Q
    ||||| ||||||||||||    
T  4085674 gtagtaagttccgttttt 4085691  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 44318073 - 44318139
Alignment:
Q  29 gaggagcgtacggtggagtagagaaggcgtggtatggaggactttatgaagaaacgattcatggcgg 95  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  44318073 gaggagcgtacggtggagtagagaaggcgtggtatggaggaccttgagaagaaacgattcatggcgg 44318139  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 43897378 - 43897426
Alignment:
Q  48 agagaaggcgtggtatggaggactttatgaagaaacgattcatggcggc 96  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||||||    
T  43897378 agagaaggcgtggtatggaggaccttgaaaagaaacgattcatggcggc 43897426  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 44307918 - 44307981
Alignment:
Q  29 gaggagcgtacggtggagtagagaaggcgtggtatggaggactttatgaagaaacgattcatggcgg 95  Q
    ||||||||||||||||||| |||||||| ||| | ||||||| ||   |||||||||||||||||||    
T  44307918 gaggagcgtacggtggagtcgagaaggcatggcaaggaggacctt---aagaaacgattcatggcgg 44307981  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 18703060 - 18703130
Alignment:
Q  26 gaggaggagcgtacggtggagtagagaaggcgtggtatggaggactttatgaagaaacgattcatggcggc 96  Q
    |||||||||||||||||||||||||||||  |||| | ||||||| ||  |||||||||||||||||||||    
T  18703060 gaggaggagcgtacggtggagtagagaagcagtggaaaggaggaccttgagaagaaacgattcatggcggc 18703130  T

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