View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14763_low_6 (Length: 407)
Name: NF14763_low_6
Description: NF14763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14763_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 51977247 - 51977402
Alignment:
| Q |
239 |
cagcttttgtcgttggatgttttgtttcttttgtggttgcattttctcgtttggtcaattatgtacttgagtt--tgtgtcttcaattgtggttctattt |
336 |
Q |
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| T |
51977247 |
cagcttttgtcgttggatgttttgtttcttttgtggttgcattttctcgtttggtcaattatgtacttgagtttgtgtgtcttcaattgtggttgtattt |
51977346 |
T |
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| Q |
337 |
ctagaaaaggctcaacactcttttttcagccctttaattaacatgtcctttctctg |
392 |
Q |
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| T |
51977347 |
ctagaaaaggctcaacactcttttttcagccctttaattaacatgtcctttctctg |
51977402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 51974014 - 51974152
Alignment:
| Q |
15 |
atttcaatttgccgagggaggttttgttacactcctacctatttgtagtttgtccatatatatttcaaaatgttcttgagcttttgtatgattggtcgtt |
114 |
Q |
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| T |
51974014 |
atttcaatttgctgagggaggtttcgttacactcctacctatttgtagt--gtccatatatatttcaaaatgttcttgagcttctgtatgattggtcgtt |
51974111 |
T |
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| Q |
115 |
taaatttcgatattactgtattcaattttacatttttacta |
155 |
Q |
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| T |
51974112 |
taaatttcgatattactgtattcaattttacatttttacta |
51974152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 51975280 - 51975347
Alignment:
| Q |
159 |
ttttatatgaccatcatgttctactctataacacaaattggttaataattatggcatgttaacttttt |
226 |
Q |
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| T |
51975280 |
ttttatatgaccatcatgttctactctataacacaaattggttaataattatggcatgttaacttttt |
51975347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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