View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14763_low_9 (Length: 268)
Name: NF14763_low_9
Description: NF14763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14763_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 38794166 - 38793912
Alignment:
| Q |
1 |
ctctggagatactgtaaagtgggatgcataaacaaatcatgcttaattaaagaaatataaatggacttaccataaatttttgttcttgtttagtctgaac |
100 |
Q |
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| T |
38794166 |
ctctggagataccgtaaagtgggatgcataaacaaatcatgcttaattaaagaaatataaatggacttaccataaatttttgttcttgtttagtctgaac |
38794067 |
T |
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| Q |
101 |
tctgaacgttctgtaccagtaagcgggattgagtcctctaatggttaccttttggtatcgcataaatcaatcaatgttgatgctcatcgtcatattttac |
200 |
Q |
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| T |
38794066 |
tctgaacgttctgtaccagtaagcgggattgagtcctctaatggttaccttttggtatcgcataaatcaatcaatgttgatgctcatcgtcatattttac |
38793967 |
T |
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| Q |
201 |
caattcatcacgacctttcttaacgcctgcagccaagccactcccagaataatgt |
255 |
Q |
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| T |
38793966 |
caattcatcacgacctttcttaacgcctgcagccaagccactcccactataatgt |
38793912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 52471850 - 52471899
Alignment:
| Q |
131 |
gagtcctctaatggttaccttttggtatcgcataaatcaatcaatgttga |
180 |
Q |
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| T |
52471850 |
gagtcttctaaaggttaccttttggtatcccataaattaaacaatgttga |
52471899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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