View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14764_high_1 (Length: 495)

Name: NF14764_high_1
Description: NF14764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14764_high_1
NF14764_high_1
[»] chr7 (3 HSPs)
chr7 (20-481)||(1524492-1524952)
chr7 (23-481)||(8491289-8491748)
chr7 (23-481)||(8518096-8518557)
[»] chr8 (2 HSPs)
chr8 (33-243)||(29711242-29711450)
chr8 (306-479)||(29710181-29710351)
[»] chr5 (5 HSPs)
chr5 (34-243)||(15165943-15166153)
chr5 (33-241)||(15170208-15170414)
chr5 (389-481)||(15169150-15169242)
chr5 (389-480)||(15173944-15174035)
chr5 (397-481)||(15164873-15164957)
[»] chr4 (3 HSPs)
chr4 (33-243)||(55804008-55804216)
chr4 (33-243)||(55808599-55808807)
chr4 (306-479)||(55805299-55805469)


Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Complemental strand, 1524952 - 1524492
Alignment:
Q  20 tgaaatgttaaggacaacatgctatgtcctttacaaggtcactccgaaaagaaactgtagaaagacagcatatatatttacacataccagttttgctttc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1524952 tgaaatgttaaggacaacatgctatgtcctttacaaggtcactccgaaa-gaaactgtagaaagacagcatatatatttacacatacctgttttgctttc 1524854  T
Q  120 tgaaattcaccgtaagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagt 219  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  1524853 tcaaattcatcgtaagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggatcccagattgttccatctcttcataatactacaagt 1524754  T
Q  220 aaacattctaattaccaactcgataatatattgaaagaaagctttttactacaatgatatcttttgaaagcatacattnnnnnnnnggtaaaacttacat 319  Q
    ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  1524753 aaatattctaattagcaactcgataatatattgaaagaaaactttttactacaatgatatcttttgaaagcatacattaaaaaaaaggtaaaacttacat 1524654  T
Q  320 ctttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgtactcgaaatagtactcgcgatggcgacttaggatggaatagatttgatc 419  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  1524653 ctttcatcactgcaccaaaatgtaacgaaaggctacaaatctttttcttgtactcaaaatagtactcgcgatggtgacttaggatggaatagatttgatc 1524554  T
Q  420 aaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa 481  Q
    |||||||||||||||||||| |||||||||||||||||||||| | |||||||| |||||||    
T  1524553 aaccttgattttcaatatagcaaaaggaatataaaatgaacaatcagatatttgaaaaacaa 1524492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 481
Target Start/End: Original strand, 8491289 - 8491748
Alignment:
Q  23 aatgttaaggacaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctg 121  Q
    |||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||     
T  8491289 aatgttaaggacaaaatgctatgtcctttacaaggtcactacaaaagagaaactgtagaatgacagcatatatatttacacatacctgttttgctttctc 8491388  T
Q  122 aaattcaccgtaagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaa 221  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||| ||    
T  8491389 aaattcatcgtaagctgcatatgcatgaagaagggctacaaaaacttcttttgcgaagttgatttcagattgttccatctcttcataatactacaaggaa 8491488  T
Q  222 acattctaattaccaactcgataatatattgaaagaaagctttttactacaatgatatcttttgaaagcatacattnnnnnnnnggtaaaacttacatct 321  Q
    | |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  8491489 atattctaattagcaacttgataatatattgaaagaaagctttttactacaatgatatcttttgaaagcatacattaaaaaaaaggtaaaacttacatct 8491588  T
Q  322 ttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgta-ctcgaaatagtactcgcgatggcgacttaggatggaatagatttgatca 420  Q
    ||||||||| ||| ||| |||  |||||| ||  ||||||| ||| | || || ||||| ||    |||||||||||||| ||||||| |||||||||||    
T  8491589 ttcatcactacactaaagtgtgccgaaagccagtaaatctt-ttcatttatcttgaaatggtgaaggcgatggcgacttaagatggaagagatttgatca 8491687  T
Q  421 accttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa 481  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||| |||||| |||||||||    
T  8491688 accttgattgtcaatatagcaaaaggaatagaaaatgaacaaccagatattagtaaaacaa 8491748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 481
Target Start/End: Original strand, 8518096 - 8518557
Alignment:
Q  23 aatgttaaggacaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctg 121  Q
    |||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||     
T  8518096 aatgttaaggacaaaatgctatgtcctttacaaggtcactacaaaagagaaactgtagaatgacagcatatatatttacacatacctgttttgctttctc 8518195  T
Q  122 aaattcaccgtaagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaa 221  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||    
T  8518196 aaattcatcgtaagctgcatatgcatgaagaagggctacaaaaacttcttttgcgaagttgattccagattgttccatctcttcataatactacaaggaa 8518295  T
Q  222 acattctaattaccaactcgataatatattgaaagaaagctttttactacaatgatatcttttgaaagcata-catt-nnnnnnnnggtaaaacttacat 319  Q
    | |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||         ||||||||||||||    
T  8518296 atattctaattagcaacttgataatatattgaaagaaagctttttactacaatgatatcttttaaaagcataccattaaaaaaaaaggtaaaacttacat 8518395  T
Q  320 ctttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgtactcgaaatagtactcgcgatggcgacttaggatggaatagatttgatc 419  Q
    ||||||||||| ||| ||| |||  |||||| ||  ||||||| || ||   || ||||| ||    |||||||||||||| ||||||| ||||||||||    
T  8518396 ctttcatcactacactaaagtgtgccgaaagccagtaaatctttttatttatcttgaaatggtgaaggcgatggcgacttaagatggaagagatttgatc 8518495  T
Q  420 aaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa 481  Q
    |||||||||| ||||||||| || ||||||| ||||||||||||| |||||| |||||||||    
T  8518496 aaccttgattgtcaatatagcaataggaatagaaaatgaacaaccagatattagtaaaacaa 8518557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 33 - 243
Target Start/End: Complemental strand, 29711450 - 29711242
Alignment:
Q  33 acaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccg 131  Q
    ||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||| ||||| ||   | ||||||| |||   |||  | | ||||||||    
T  29711450 acaacatgctatgacctttacaaggtcactccaaaagagaaaccgtagaaagacaacatatttacacaaacatacctgtt---cttcataatattcaccg 29711354  T
Q  132 taagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaat 231  Q
     ||| | ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  29711353 caaggtacatatgcatgaatcagggctacaaaaacttcttttgtcaagtggattccagattgttccatctcttcataatactacaagtaaatattctaat 29711254  T
Q  232 taccaactcgat 243  Q
    || |||||||||    
T  29711253 tagcaactcgat 29711242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 479
Target Start/End: Complemental strand, 29710351 - 29710181
Alignment:
Q  306 ggtaaaacttacatctttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgtactcgaaatagtactcgcgatggcgacttaggatg 405  Q
    ||||||||||||||||||||||||| ||| | | |||| | |||| || ||||||||    ||  ||||||||| ||    | |||||||||| | ||||    
T  29710351 ggtaaaacttacatctttcatcactacacaacagtgtaccaaaagccagcaaatctttccatttaactcgaaatggtg---gggatggcgactcatgatg 29710255  T
Q  406 gaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaac 479  Q
    |||||||||| |  |||||||||||||||||||| |||||||||| ||||||||||| | ||| || |||||||    
T  29710254 gaatagatttcaaaaaccttgattttcaatatagcaaaaggaatagaaaatgaacaaacagattttagtaaaac 29710181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 15166153 - 15165943
Alignment:
Q  34 caacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccgt 132  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||| ||   | ||||||| ||||| ||   | ||||||||||     
T  15166153 caacatgctatgtcctttacaaggtcactccaaaagagaaattgtagaaagacaacatatttacacaaacatacctgtttttctgcatcaaattcaccgc 15166054  T
Q  133 aagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaatt 232  Q
    ||||||||||||||||||| |||| |||||||||||||||||  ||||| || |||||||||| |||||||||||||||||| |  |||| |||||||||    
T  15166053 aagctgcatatgcatgaatcagggatacaaaaacttcttttgtcaagtgaatcccagattgttccatctcttcataatactatagataaatattctaatt 15165954  T
Q  233 accaactcgat 243  Q
    | |||||||||    
T  15165953 aacaactcgat 15165943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 15170414 - 15170208
Alignment:
Q  33 acaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccg 131  Q
    ||||||| |||||||||||||||||||| ||| ||| |||||| ||||||||||| ||||| ||   | ||||||| |||   |||  | |  ||||| |    
T  15170414 acaacatactatgtcctttacaaggtcattccaaaagagaaaccgtagaaagacaacatatttacacaaacatacctgtt---cttcataatcttcacag 15170318  T
Q  132 taagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaat 231  Q
     ||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  15170317 caagctgcatatgcatgaatcagggctacaaaaacttcttttgtcaagtgggttccagattgttccatctcttcataatactacaagtaaatattctaat 15170218  T
Q  232 taccaactcg 241  Q
    || |||||||    
T  15170217 tagcaactcg 15170208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 389 - 481
Target Start/End: Complemental strand, 15169242 - 15169150
Alignment:
Q  389 gatggcgacttaggatggaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa 481  Q
    |||||||||||| |||||||||||||| |  |||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||||    
T  15169242 gatggcgacttatgatggaatagatttcaaaaaccttgattttcaatatagcaaaaggaatagaaaatgaacaaacggatattagtaaaacaa 15169150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 389 - 480
Target Start/End: Complemental strand, 15174035 - 15173944
Alignment:
Q  389 gatggcgacttaggatggaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaaca 480  Q
    |||||||||||| |||||||||||||| |  ||||||||||||||| |||| |||||||||||||||||||||| |  ||||| ||||||||    
T  15174035 gatggcgacttatgatggaatagatttcaaaaaccttgattttcaacatagcaaaaggaatataaaatgaacaaacaaatattagtaaaaca 15173944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 15164957 - 15164873
Alignment:
Q  397 cttaggatggaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa 481  Q
    |||| |||||||||||||| |  |  ||||||||||||||||| |||| ||||| ||||||||||| |  ||||| |||||||||    
T  15164957 cttatgatggaatagattttaaaatacttgattttcaatatagcaaaatgaatagaaaatgaacaaacatatattagtaaaacaa 15164873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 33 - 243
Target Start/End: Original strand, 55804008 - 55804216
Alignment:
Q  33 acaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccg 131  Q
    ||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||| ||||| ||   | ||||||  |||   |||  | | ||||||||    
T  55804008 acaacatgctatgacctttacaaggtcactccaaaagagaaaccgtagaaagacaacatatttaaacaaacatactcgtt---cttcataatattcaccg 55804104  T
Q  132 taagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaat 231  Q
     ||| | ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  55804105 caaggtacatatgcatgaatcagggctacaaaaacttcttttgtcaagtggattccagattgttccatctcttcataatactacaagtaaatattctaat 55804204  T
Q  232 taccaactcgat 243  Q
    || |||||||||    
T  55804205 tagcaactcgat 55804216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 33 - 243
Target Start/End: Original strand, 55808599 - 55808807
Alignment:
Q  33 acaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccg 131  Q
    |||||||| |||| |||||||||||||||||| ||| |||||| ||||||||||| ||||| ||   | | ||||  |||   |||  | | ||||||||    
T  55808599 acaacatgttatgacctttacaaggtcactccaaaagagaaaccgtagaaagacaacatatttacacaaatatacttgtt---cttcataatattcaccg 55808695  T
Q  132 taagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaat 231  Q
     ||| | ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  55808696 caaggtacatatgcatgaatcagggctacaaaaacttcttttgtcaagtggattccagattgttccatctcttcataatactacaagtaaatattataat 55808795  T
Q  232 taccaactcgat 243  Q
    || |||||||||    
T  55808796 tagcaactcgat 55808807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 479
Target Start/End: Original strand, 55805299 - 55805469
Alignment:
Q  306 ggtaaaacttacatctttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgtactcgaaatagtactcgcgatggcgacttaggatg 405  Q
    ||||||||||||||||||||||||| ||| | | |||| | |||| || ||||||||    ||  ||||||||| ||    | |||||||||| | ||||    
T  55805299 ggtaaaacttacatctttcatcactacacaacagtgtaccaaaagccagcaaatctttccatttaactcgaaatggtg---gggatggcgactcatgatg 55805395  T
Q  406 gaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaac 479  Q
    |||||||||| |  |||||||||||||||||||| |||||||||| ||||||||||| | ||| || |||||||    
T  55805396 gaatagatttcaaaaaccttgattttcaatatagcaaaaggaatagaaaatgaacaaacagattttagtaaaac 55805469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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