View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14764_low_1 (Length: 709)
Name: NF14764_low_1
Description: NF14764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14764_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 12 - 691
Target Start/End: Complemental strand, 33089838 - 33089159
Alignment:
| Q |
12 |
attgaaaccaaacccaattcaacaaacctctccaaaatcacttttttactctttgatgagtaaaccaaatgaaaaattgttgataaacatgcttttgtag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089838 |
attgaaaccaaacccaattcaacaaacctctccaaaatcacttttttactctttgatgagtaaaccaaatgaaaaattgttgataaacatgcttttgtag |
33089739 |
T |
|
| Q |
112 |
aagcactcccaatctcaacattaaccttaaccatgttgaccaaagattcaacaatcccttcaatttttgccaatgactcaacattcatttccttaagcaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089738 |
aagcactcccaatctcaacattaaccttaaccatgttgaccaaagattcaacaatcccttcaatttttgccaatgactcaacattcatttccttaagcaa |
33089639 |
T |
|
| Q |
212 |
caaagaagcattttgcctggttgaaattttttgttgatcatttaagaaccaaaccaaacaactcaaagaatttgaagatcccaaaaagacaaatctactc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089638 |
caaagaagcattttgcctggttgaaattttttgttgatcatttaagaaccaaaccaaacaactcaaagaatttgaagatcccaaaaagacaaatctactc |
33089539 |
T |
|
| Q |
312 |
tcttcagaaagaggacgcatccatgtcagcacttccaaaatctcttccaaaagaacaacgttcttctcaatcaaaccacgtgagaaagaatcaaaaacct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089538 |
tcttcagaaagaggacgcatccatgtcagcacttccaaaatctcttccaaaagaacaacgttcttctcaatcaaaccacgtgagaaagaatcaaaaacct |
33089439 |
T |
|
| Q |
412 |
tagcaagaacaagagaaacaccatttgaaactataaccttcttgttcctctcactctcttttccccaaccctttatctttctcaccaattcaaaacactt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089438 |
tagcaagaacaagagaaacaccatttgaaactataaccttcttgttcctctcactctcttttccccaaccctttatctttctcaccaattcaaaacactt |
33089339 |
T |
|
| Q |
512 |
gctctcatctccttgttgcgctgccgaaagaatcctattacacgtatcagtaacttcataacgagttactggaatacgtggagttgggattctttcgacg |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089338 |
gctctcatctccttgttgcgctgccgaaagaatcctactacacgtatcagtaacttcataacgagttactggaatacgtggagttgggattctttcgacg |
33089239 |
T |
|
| Q |
612 |
ccataggaacagtgttgaacacaccaatcttgaatcattctacgtagagagtgatttggtacgatgtcaaaggatgttaa |
691 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33089238 |
ccataggaacggtgttgaacacaccaatcttgaatcattctacgtagagagtgatttggtacgatgtcaaaggatgttaa |
33089159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 470
Target Start/End: Complemental strand, 29353916 - 29353842
Alignment:
| Q |
396 |
aaagaatcaaaaaccttagcaagaacaagagaaacaccatttgaaactataaccttcttgttcctctcactctct |
470 |
Q |
| |
|
||||||||||||||| |||| | |||| |||||| |||||| || ||||||| |||| ||||||||||||||| |
|
|
| T |
29353916 |
aaagaatcaaaaaccgtagctaaaacagaagaaactccatttccaattataaccctcttattcctctcactctct |
29353842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University