View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14764_low_2 (Length: 495)
Name: NF14764_low_2
Description: NF14764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14764_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 481
Target Start/End: Complemental strand, 1524952 - 1524492
Alignment:
| Q |
20 |
tgaaatgttaaggacaacatgctatgtcctttacaaggtcactccgaaaagaaactgtagaaagacagcatatatatttacacataccagttttgctttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1524952 |
tgaaatgttaaggacaacatgctatgtcctttacaaggtcactccgaaa-gaaactgtagaaagacagcatatatatttacacatacctgttttgctttc |
1524854 |
T |
|
| Q |
120 |
tgaaattcaccgtaagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagt |
219 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
1524853 |
tcaaattcatcgtaagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggatcccagattgttccatctcttcataatactacaagt |
1524754 |
T |
|
| Q |
220 |
aaacattctaattaccaactcgataatatattgaaagaaagctttttactacaatgatatcttttgaaagcatacattnnnnnnnnggtaaaacttacat |
319 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1524753 |
aaatattctaattagcaactcgataatatattgaaagaaaactttttactacaatgatatcttttgaaagcatacattaaaaaaaaggtaaaacttacat |
1524654 |
T |
|
| Q |
320 |
ctttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgtactcgaaatagtactcgcgatggcgacttaggatggaatagatttgatc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1524653 |
ctttcatcactgcaccaaaatgtaacgaaaggctacaaatctttttcttgtactcaaaatagtactcgcgatggtgacttaggatggaatagatttgatc |
1524554 |
T |
|
| Q |
420 |
aaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa |
481 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
1524553 |
aaccttgattttcaatatagcaaaaggaatataaaatgaacaatcagatatttgaaaaacaa |
1524492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 481
Target Start/End: Original strand, 8491289 - 8491748
Alignment:
| Q |
23 |
aatgttaaggacaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctg |
121 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8491289 |
aatgttaaggacaaaatgctatgtcctttacaaggtcactacaaaagagaaactgtagaatgacagcatatatatttacacatacctgttttgctttctc |
8491388 |
T |
|
| Q |
122 |
aaattcaccgtaagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaa |
221 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||| || |
|
|
| T |
8491389 |
aaattcatcgtaagctgcatatgcatgaagaagggctacaaaaacttcttttgcgaagttgatttcagattgttccatctcttcataatactacaaggaa |
8491488 |
T |
|
| Q |
222 |
acattctaattaccaactcgataatatattgaaagaaagctttttactacaatgatatcttttgaaagcatacattnnnnnnnnggtaaaacttacatct |
321 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8491489 |
atattctaattagcaacttgataatatattgaaagaaagctttttactacaatgatatcttttgaaagcatacattaaaaaaaaggtaaaacttacatct |
8491588 |
T |
|
| Q |
322 |
ttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgta-ctcgaaatagtactcgcgatggcgacttaggatggaatagatttgatca |
420 |
Q |
| |
|
||||||||| ||| ||| ||| |||||| || ||||||| ||| | || || ||||| || |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8491589 |
ttcatcactacactaaagtgtgccgaaagccagtaaatctt-ttcatttatcttgaaatggtgaaggcgatggcgacttaagatggaagagatttgatca |
8491687 |
T |
|
| Q |
421 |
accttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa |
481 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
8491688 |
accttgattgtcaatatagcaaaaggaatagaaaatgaacaaccagatattagtaaaacaa |
8491748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 481
Target Start/End: Original strand, 8518096 - 8518557
Alignment:
| Q |
23 |
aatgttaaggacaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctg |
121 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8518096 |
aatgttaaggacaaaatgctatgtcctttacaaggtcactacaaaagagaaactgtagaatgacagcatatatatttacacatacctgttttgctttctc |
8518195 |
T |
|
| Q |
122 |
aaattcaccgtaagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaa |
221 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
8518196 |
aaattcatcgtaagctgcatatgcatgaagaagggctacaaaaacttcttttgcgaagttgattccagattgttccatctcttcataatactacaaggaa |
8518295 |
T |
|
| Q |
222 |
acattctaattaccaactcgataatatattgaaagaaagctttttactacaatgatatcttttgaaagcata-catt-nnnnnnnnggtaaaacttacat |
319 |
Q |
| |
|
| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
8518296 |
atattctaattagcaacttgataatatattgaaagaaagctttttactacaatgatatcttttaaaagcataccattaaaaaaaaaggtaaaacttacat |
8518395 |
T |
|
| Q |
320 |
ctttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgtactcgaaatagtactcgcgatggcgacttaggatggaatagatttgatc |
419 |
Q |
| |
|
||||||||||| ||| ||| ||| |||||| || ||||||| || || || ||||| || |||||||||||||| ||||||| |||||||||| |
|
|
| T |
8518396 |
ctttcatcactacactaaagtgtgccgaaagccagtaaatctttttatttatcttgaaatggtgaaggcgatggcgacttaagatggaagagatttgatc |
8518495 |
T |
|
| Q |
420 |
aaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa |
481 |
Q |
| |
|
|||||||||| ||||||||| || ||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
8518496 |
aaccttgattgtcaatatagcaataggaatagaaaatgaacaaccagatattagtaaaacaa |
8518557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 33 - 243
Target Start/End: Complemental strand, 29711450 - 29711242
Alignment:
| Q |
33 |
acaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccg |
131 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||| ||||| || | ||||||| ||| ||| | | |||||||| |
|
|
| T |
29711450 |
acaacatgctatgacctttacaaggtcactccaaaagagaaaccgtagaaagacaacatatttacacaaacatacctgtt---cttcataatattcaccg |
29711354 |
T |
|
| Q |
132 |
taagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaat |
231 |
Q |
| |
|
||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
29711353 |
caaggtacatatgcatgaatcagggctacaaaaacttcttttgtcaagtggattccagattgttccatctcttcataatactacaagtaaatattctaat |
29711254 |
T |
|
| Q |
232 |
taccaactcgat |
243 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
29711253 |
tagcaactcgat |
29711242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 479
Target Start/End: Complemental strand, 29710351 - 29710181
Alignment:
| Q |
306 |
ggtaaaacttacatctttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgtactcgaaatagtactcgcgatggcgacttaggatg |
405 |
Q |
| |
|
||||||||||||||||||||||||| ||| | | |||| | |||| || |||||||| || ||||||||| || | |||||||||| | |||| |
|
|
| T |
29710351 |
ggtaaaacttacatctttcatcactacacaacagtgtaccaaaagccagcaaatctttccatttaactcgaaatggtg---gggatggcgactcatgatg |
29710255 |
T |
|
| Q |
406 |
gaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaac |
479 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| |||||||||| ||||||||||| | ||| || ||||||| |
|
|
| T |
29710254 |
gaatagatttcaaaaaccttgattttcaatatagcaaaaggaatagaaaatgaacaaacagattttagtaaaac |
29710181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 34 - 243
Target Start/End: Complemental strand, 15166153 - 15165943
Alignment:
| Q |
34 |
caacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccgt |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||| || | ||||||| ||||| || | |||||||||| |
|
|
| T |
15166153 |
caacatgctatgtcctttacaaggtcactccaaaagagaaattgtagaaagacaacatatttacacaaacatacctgtttttctgcatcaaattcaccgc |
15166054 |
T |
|
| Q |
133 |
aagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaatt |
232 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||| ||||| || |||||||||| |||||||||||||||||| | |||| ||||||||| |
|
|
| T |
15166053 |
aagctgcatatgcatgaatcagggatacaaaaacttcttttgtcaagtgaatcccagattgttccatctcttcataatactatagataaatattctaatt |
15165954 |
T |
|
| Q |
233 |
accaactcgat |
243 |
Q |
| |
|
| ||||||||| |
|
|
| T |
15165953 |
aacaactcgat |
15165943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 15170414 - 15170208
Alignment:
| Q |
33 |
acaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccg |
131 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||| |||||| ||||||||||| ||||| || | ||||||| ||| ||| | | ||||| | |
|
|
| T |
15170414 |
acaacatactatgtcctttacaaggtcattccaaaagagaaaccgtagaaagacaacatatttacacaaacatacctgtt---cttcataatcttcacag |
15170318 |
T |
|
| Q |
132 |
taagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaat |
231 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
15170317 |
caagctgcatatgcatgaatcagggctacaaaaacttcttttgtcaagtgggttccagattgttccatctcttcataatactacaagtaaatattctaat |
15170218 |
T |
|
| Q |
232 |
taccaactcg |
241 |
Q |
| |
|
|| ||||||| |
|
|
| T |
15170217 |
tagcaactcg |
15170208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 389 - 481
Target Start/End: Complemental strand, 15169242 - 15169150
Alignment:
| Q |
389 |
gatggcgacttaggatggaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa |
481 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
15169242 |
gatggcgacttatgatggaatagatttcaaaaaccttgattttcaatatagcaaaaggaatagaaaatgaacaaacggatattagtaaaacaa |
15169150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 389 - 480
Target Start/End: Complemental strand, 15174035 - 15173944
Alignment:
| Q |
389 |
gatggcgacttaggatggaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaaca |
480 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
15174035 |
gatggcgacttatgatggaatagatttcaaaaaccttgattttcaacatagcaaaaggaatataaaatgaacaaacaaatattagtaaaaca |
15173944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 15164957 - 15164873
Alignment:
| Q |
397 |
cttaggatggaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaacaa |
481 |
Q |
| |
|
|||| |||||||||||||| | | ||||||||||||||||| |||| ||||| ||||||||||| | ||||| ||||||||| |
|
|
| T |
15164957 |
cttatgatggaatagattttaaaatacttgattttcaatatagcaaaatgaatagaaaatgaacaaacatatattagtaaaacaa |
15164873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 33 - 243
Target Start/End: Original strand, 55804008 - 55804216
Alignment:
| Q |
33 |
acaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccg |
131 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||| ||||| || | |||||| ||| ||| | | |||||||| |
|
|
| T |
55804008 |
acaacatgctatgacctttacaaggtcactccaaaagagaaaccgtagaaagacaacatatttaaacaaacatactcgtt---cttcataatattcaccg |
55804104 |
T |
|
| Q |
132 |
taagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaat |
231 |
Q |
| |
|
||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
55804105 |
caaggtacatatgcatgaatcagggctacaaaaacttcttttgtcaagtggattccagattgttccatctcttcataatactacaagtaaatattctaat |
55804204 |
T |
|
| Q |
232 |
taccaactcgat |
243 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
55804205 |
tagcaactcgat |
55804216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 33 - 243
Target Start/End: Original strand, 55808599 - 55808807
Alignment:
| Q |
33 |
acaacatgctatgtcctttacaaggtcactccgaaa-agaaactgtagaaagacagcatatatatttacacataccagttttgctttctgaaattcaccg |
131 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||| |||||| ||||||||||| ||||| || | | |||| ||| ||| | | |||||||| |
|
|
| T |
55808599 |
acaacatgttatgacctttacaaggtcactccaaaagagaaaccgtagaaagacaacatatttacacaaatatacttgtt---cttcataatattcaccg |
55808695 |
T |
|
| Q |
132 |
taagctgcatatgcatgaataagggctacaaaaacttcttttgagaagtggattccagattgttgcatctcttcataatactacaagtaaacattctaat |
231 |
Q |
| |
|
||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| |
|
|
| T |
55808696 |
caaggtacatatgcatgaatcagggctacaaaaacttcttttgtcaagtggattccagattgttccatctcttcataatactacaagtaaatattataat |
55808795 |
T |
|
| Q |
232 |
taccaactcgat |
243 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
55808796 |
tagcaactcgat |
55808807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 479
Target Start/End: Original strand, 55805299 - 55805469
Alignment:
| Q |
306 |
ggtaaaacttacatctttcatcactgcaccaaaatgtaacgaaaggcaacaaatcttcttcttgtactcgaaatagtactcgcgatggcgacttaggatg |
405 |
Q |
| |
|
||||||||||||||||||||||||| ||| | | |||| | |||| || |||||||| || ||||||||| || | |||||||||| | |||| |
|
|
| T |
55805299 |
ggtaaaacttacatctttcatcactacacaacagtgtaccaaaagccagcaaatctttccatttaactcgaaatggtg---gggatggcgactcatgatg |
55805395 |
T |
|
| Q |
406 |
gaatagatttgatcaaccttgattttcaatataggaaaaggaatataaaatgaacaaccggatatttgtaaaac |
479 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| |||||||||| ||||||||||| | ||| || ||||||| |
|
|
| T |
55805396 |
gaatagatttcaaaaaccttgattttcaatatagcaaaaggaatagaaaatgaacaaacagattttagtaaaac |
55805469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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