View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14764_low_3 (Length: 424)
Name: NF14764_low_3
Description: NF14764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14764_low_3 |
 | |
|
| [»] chr3 (29 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 10888910 - 10889316
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10888910 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
10889009 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
10889010 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtaatagcttgcaactttttgcacaacataaagatat |
10889109 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10889110 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagag |
10889209 |
T |
|
| Q |
318 |
acaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10889210 |
acaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttg |
10889309 |
T |
|
| Q |
418 |
cacaact |
424 |
Q |
| |
|
||||||| |
|
|
| T |
10889310 |
cacaact |
10889316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 11160482 - 11160076
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11160482 |
gtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
11160383 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11160382 |
gcttcctttcttctccttttaacaccttctatagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
11160283 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagag |
317 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11160282 |
ccttggtttgcaaagtaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgcatctgtcatggttggtagaaatgatgataaagag |
11160183 |
T |
|
| Q |
318 |
acaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11160182 |
acaataatgaacatgttgctatcagagagtagcactggcaataacaatataggcgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttg |
11160083 |
T |
|
| Q |
418 |
cacaact |
424 |
Q |
| |
|
||||||| |
|
|
| T |
11160082 |
cacaact |
11160076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 8860891 - 8861296
Alignment:
| Q |
19 |
tctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggag |
118 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||||| | |||||||||||| ||||||||||| |
|
|
| T |
8860891 |
tctttgatgctgaggatttgctcaaccaaatcagttatgattcattacgatgcaaggtggaggatacacaagctgcaaacaaaactaatcaggtgtggaa |
8860990 |
T |
|
| Q |
119 |
cttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8860991 |
cttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaaattttcgcacaacataaagatatc |
8861090 |
T |
|
| Q |
219 |
cttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8861091 |
cttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagaga |
8861190 |
T |
|
| Q |
319 |
caataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgc |
418 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8861191 |
cagtaatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgc |
8861290 |
T |
|
| Q |
419 |
acaact |
424 |
Q |
| |
|
|||||| |
|
|
| T |
8861291 |
acaact |
8861296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 11149318 - 11148915
Alignment:
| Q |
19 |
tctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggag |
118 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11149318 |
tctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggag |
11149219 |
T |
|
| Q |
119 |
cttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatc |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | | ||||| |||| |||||| | ||||||||| |
|
|
| T |
11149218 |
cttcctttcttctccttttaacaccatctacagagagatcaattcccaaatgaagaccatgtgtgacaacctgcaaatttttgcacaaaacaaagatatc |
11149119 |
T |
|
| Q |
219 |
cttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagaga |
318 |
Q |
| |
|
||||||||||||||||||| || || | ||| | |||||| ||||| ||||| || ||||||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
11149118 |
cttggtttgcaaactaaaagtgctagaattttccatagaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaagaga |
11149019 |
T |
|
| Q |
319 |
caataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgc |
418 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| |
|
|
| T |
11149018 |
taataacgaacatgttgctatcaaagagcagcactagcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgc |
11148919 |
T |
|
| Q |
419 |
acaa |
422 |
Q |
| |
|
|||| |
|
|
| T |
11148918 |
acaa |
11148915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 11131490 - 11131087
Alignment:
| Q |
19 |
tctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggag |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| | |||||||||||| |||||| |||| |
|
|
| T |
11131490 |
tctttgatgcggaggatttgctgaatcaaattagttatgagtcactgcgatgcaaggtggagaatacacaagctgcaaacaaaactaatcaggtctggaa |
11131391 |
T |
|
| Q |
119 |
cttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatc |
218 |
Q |
| |
|
||||||||||||||||||||| | | |||| ||||||||||||||||||| |||| ||||||||| | | ||||| |||| |||||| | ||||||||| |
|
|
| T |
11131390 |
cttcctttcttctccttttaaaaacatctatggagagatcaattcccaaattaagaccatgtgtgacaacctgcaaatttttgcacaaaacaaagatatc |
11131291 |
T |
|
| Q |
219 |
cttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagaga |
318 |
Q |
| |
|
|||||||| |||||||||| || || | ||| | |||||| ||||| ||||| || ||||||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
11131290 |
cttggtttacaaactaaaagtgctagaattttccatagaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaagaga |
11131191 |
T |
|
| Q |
319 |
caataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgc |
418 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| |
|
|
| T |
11131190 |
caataacgaacatgttgctatcaaagagcagcactagcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgc |
11131091 |
T |
|
| Q |
419 |
acaa |
422 |
Q |
| |
|
|||| |
|
|
| T |
11131090 |
acaa |
11131087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 10376309 - 10375904
Alignment:
| Q |
19 |
tctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggag |
118 |
Q |
| |
|
|||||||||| ||||| ||||| || |||| |||||||| || |||||||||||||||||||| || || | ||||||||||| |||||||| || |
|
|
| T |
10376309 |
tctttgatgctgaggacttgctcaatgaaatcagttatgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgttgaa |
10376210 |
T |
|
| Q |
119 |
cttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| | || ||||| |||||||||| |
|
|
| T |
10376209 |
cttcctttcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaattctttgcacagtataaagatata |
10376110 |
T |
|
| Q |
219 |
cttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagaga |
318 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||||||||| | |
|
|
| T |
10376109 |
cttggtctgcaaactaaaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagaca |
10376010 |
T |
|
| Q |
319 |
caataatgaacatgttgctatcagagagcag-cactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttg |
417 |
Q |
| |
|
| ||||||||||||||||||||||||| ||| ||| | |||| ||||| ||||||||||||||||| || ||||||||| | || ||||| || |||| |
|
|
| T |
10376009 |
ctataatgaacatgttgctatcagaga-cagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttg |
10375911 |
T |
|
| Q |
418 |
cacaact |
424 |
Q |
| |
|
||||||| |
|
|
| T |
10375910 |
cacaact |
10375904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 9838465 - 9838871
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||| ||||| || || |||||||||||||||||||| || || | ||||||||||| ||||||||||| |
|
|
| T |
9838465 |
gtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtgga |
9838564 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
||||||||||||||||||||| | || |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
9838565 |
acttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatat |
9838664 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagag |
317 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||| ||||| ||||||| || |||||||||||| |||| ||||| || | ||| |||||| |
|
|
| T |
9838665 |
acttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagag |
9838764 |
T |
|
| Q |
318 |
acaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttg |
417 |
Q |
| |
|
||||||||||||||||||||||| | || ||| | |||||||||| ||||||||||||||||| || ||||||||| | || ||||| || |||| |
|
|
| T |
9838765 |
acaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttg |
9838864 |
T |
|
| Q |
418 |
cacaact |
424 |
Q |
| |
|
| ||||| |
|
|
| T |
9838865 |
cccaact |
9838871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 9849343 - 9849749
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||| ||||| || || |||||||||||||||||||| || || | ||||||||||| ||||||||||| |
|
|
| T |
9849343 |
gtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtgga |
9849442 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
||||||||||||||||||||| | || |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
9849443 |
acttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactttatgcacagaataaagatat |
9849542 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagag |
317 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||| ||||| ||||||| || |||||||||||| |||| ||||| || | ||| |||||| |
|
|
| T |
9849543 |
acttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagag |
9849642 |
T |
|
| Q |
318 |
acaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttg |
417 |
Q |
| |
|
||||||||||||||||||||||| | || ||| | |||||||||| ||||||||||||||||| || ||||||||| | || ||||| || |||| |
|
|
| T |
9849643 |
acaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttg |
9849742 |
T |
|
| Q |
418 |
cacaact |
424 |
Q |
| |
|
| ||||| |
|
|
| T |
9849743 |
cccaact |
9849749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 10434509 - 10434103
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
||||||||||| ||||| ||||| ||| |||| |||||||| || | |||| |||||||||||||||||| | ||||||||||| |||||||| || |
|
|
| T |
10434509 |
gtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatccaaggtggagaatacacatgctcaaaacaaaactaatcaggtgttga |
10434410 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
10434409 |
acttcctttcatctccttttaatagtttctacagagagatcaattctcaaatgaagatcatgtgtgaaagcttgcaactttttgcacagaataaagatat |
10434310 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagag |
317 |
Q |
| |
|
|||||| ||||||| |||| ||| | |||||||| ||||| ||||||||||| || || ||||||||| |||||||||| || || ||||| |||||| |
|
|
| T |
10434309 |
acttggtctgcaaaccaaaagtgggagagtttctcatagaaatccttcaagttctgtggtcaatgaatctttcatggttggaaggaaggatgacaaagag |
10434210 |
T |
|
| Q |
318 |
acaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttg |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||| | |||| || || |||||||||||||||||||| ||||||||| | || ||||| || |||| |
|
|
| T |
10434209 |
acaataatgaacatgttgctatcacagagaaacacaactcataataagataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttg |
10434110 |
T |
|
| Q |
418 |
cacaact |
424 |
Q |
| |
|
| ||||| |
|
|
| T |
10434109 |
cccaact |
10434103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 424
Target Start/End: Original strand, 10580209 - 10580611
Alignment:
| Q |
22 |
ttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagctt |
121 |
Q |
| |
|
||||||| ||||| ||||| || |||| ||||| || || |||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||| |
|
|
| T |
10580209 |
ttgatgctgaggacttgctcaatgaaatcagttacgattccctgcgatgcaaggtggagaatacacaagctcaaaacaaaactaatcaggtgtggaactt |
10580308 |
T |
|
| Q |
122 |
cctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatcctt |
221 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||| | | ||||| | || ||| | ||||||||| ||||| |
|
|
| T |
10580309 |
cctttcttctccttttaatagcttctatagagagatcaattcccagatgaagatcatgtgtgaaaacctgcaattgtttgcaaatcataaagatgtcctt |
10580408 |
T |
|
| Q |
222 |
ggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaa |
321 |
Q |
| |
|
|||||||||||||| | || || |||||||| | |||| ||||||||||| || |||| |||||||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
10580409 |
ggtttgcaaactaagagtgctagagtttctcatggaactccttcaagttctgtgtttaacgaatctgtcatggtgggtaggaaggatgacaaagagacaa |
10580508 |
T |
|
| Q |
322 |
taatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcaca |
421 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| | |||| ||||| ||||||||||||||||| || ||||||||| | || ||||| || ||||| || |
|
|
| T |
10580509 |
taatgaacatgttgctatcacagagaaacacaatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgccca |
10580608 |
T |
|
| Q |
422 |
act |
424 |
Q |
| |
|
||| |
|
|
| T |
10580609 |
act |
10580611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 11768839 - 11769244
Alignment:
| Q |
19 |
tctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggag |
118 |
Q |
| |
|
|||||||||| |||||||| || | ||||| |||||||| || | ||||||||| ||||||| | |||| | | ||||||||||| ||||||||||| |
|
|
| T |
11768839 |
tctttgatgctgaggatttactcgatcaaataagttatgactccctccgatgcaagatggagaagaaacaagctagaaacaaaactaatcaggtgtggaa |
11768938 |
T |
|
| Q |
119 |
cttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatc |
218 |
Q |
| |
|
||| ||||| || |||||||| | | |||| |||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||| |||||||||| |
|
|
| T |
11768939 |
cttactttcatccccttttaaaaacatctatggagagatcaattcccatatgaagatcatgtgtgaaagcctgcaactttttgcacaaaataaagatata |
11769038 |
T |
|
| Q |
219 |
cttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagaga |
318 |
Q |
| |
|
| |||||||||||||||| || || ||||||||||||||| |||||||||||||| || |||||||||||||| || ||||| || |||| ||||||| |
|
|
| T |
11769039 |
ttaggtttgcaaactaaaagtgctagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatagtgggtaggaagaatgacaaagaga |
11769138 |
T |
|
| Q |
319 |
caataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgc |
418 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| | |||| ||||| ||||||||||||||||| || ||||||||| | || ||||| || ||||| |
|
|
| T |
11769139 |
caataatgaacatgttgctatcacagagagacacaatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgc |
11769238 |
T |
|
| Q |
419 |
acaact |
424 |
Q |
| |
|
||||| |
|
|
| T |
11769239 |
tcaact |
11769244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 10088394 - 10088800
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
||||||||||| ||||| ||||| | | |||| |||||||| || | |||||||||||||||||| ||||| | |||||||| | ||||||| || |
|
|
| T |
10088394 |
gtctttgatgctgaggacttgctcagcgaaatcagttatgattcccttcgatgcaaggtggagaatgcacaagctcaaaacaaaagttatcaggtgatga |
10088493 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||| |||||||||| |
|
|
| T |
10088494 |
acttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagatcatgtgtgaaagcttgcaattgtttgcacagaataaagatat |
10088593 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagag |
317 |
Q |
| |
|
|||||| ||||||||||||| | | ||||| | |||||| ||||||||||| || || ||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
10088594 |
acttggtctgcaaactaaaatcgcaagggtttcacatagaactccttcaagttcggtggtaaatgaatctgtcatggtgggtaggaaggatgataaagag |
10088693 |
T |
|
| Q |
318 |
acaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttg |
417 |
Q |
| |
|
|||||||||||||||||||| ||| |||| || | | || ||||| |||||||||||||||||||| ||||||||| | || ||||| || |||| |
|
|
| T |
10088694 |
acaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttg |
10088793 |
T |
|
| Q |
418 |
cacaact |
424 |
Q |
| |
|
| ||||| |
|
|
| T |
10088794 |
cccaact |
10088800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 10195277 - 10195683
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
||||||||||| ||||| ||| | | | |||| |||||||| || | |||||||||||||||||| ||||| | |||||||| | ||||||| || |
|
|
| T |
10195277 |
gtctttgatgctgaggacttgttcagcgaaatcagttatgattcccttcgatgcaaggtggagaatgcacaagctcaaaacaaaagttatcaggtgatga |
10195376 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||||||| | || ||||| |||||||||| |
|
|
| T |
10195377 |
acttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagatcatgtgtgaaagcttgcaattgtttgcacagaataaagatat |
10195476 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagag |
317 |
Q |
| |
|
|||||| |||||||||||| | | ||||| | |||||| |||||||||||||| || ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
10195477 |
acttggtctgcaaactaaaaacgcaagggtttcacatagaactccttcaagttcagtggtaaatgaatctgtcatggtgggtagaaaggatgataaagag |
10195576 |
T |
|
| Q |
318 |
acaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttg |
417 |
Q |
| |
|
|||||||||||||||||||| ||| |||| || | | || ||||| |||||||||||||||||||| ||||||||| | || ||||| || |||| |
|
|
| T |
10195577 |
acaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttg |
10195676 |
T |
|
| Q |
418 |
cacaact |
424 |
Q |
| |
|
| ||||| |
|
|
| T |
10195677 |
cccaact |
10195683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 10076870 - 10077197
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
||||||||||| ||||| ||||| ||| |||| ||||| || ||| |||||||||||||||||||| ||||| | ||||||||||| |||||||| || |
|
|
| T |
10076870 |
gtctttgatgccgaggacttgctcaacgaaatcagttacgattcactgcgatgcaaggtggagaatgcacaagctcaaaacaaaactaatcaggtgttga |
10076969 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
||||||||| ||||||||||| | |||||||| |||||||||||| |||| ||||||||||||||| || |||||| | || ||||| |||||||| | |
|
|
| T |
10076970 |
acttcctttcatctccttttaatagcttctacaaagagatcaattctcaaacgaagatcatgtgtgaaaggttgcaattgtttgcacagaataaagatgt |
10077069 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaag---tttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaa |
314 |
Q |
| |
|
|||||| ||||||||||||||| || || ||||||||||||| |||||||||||||| || |||||||||| |||||||||| | ||| ||| |
|
|
| T |
10077070 |
acttggtctgcaaactaaaattgctagagtaatttctcgtagaacaccttcaagttcagtggtaaatgaatctgagatggttggtatggagcgtgacaaa |
10077169 |
T |
|
| Q |
315 |
gagacaataatgaacatgttgctatcag |
342 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10077170 |
gagacaataatgaacatgttgctatcag |
10077197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 10364263 - 10363857
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
||||||||||| ||||||||||| || |||| |||||||| || ||||||||| |||||| || |||| | ||||| || || ||||||||||| |
|
|
| T |
10364263 |
gtctttgatgccgaggatttgcttcacgaaatcagttatgattccctgcgatgcacaatggagagtaaacaagctggaaacagaagtaatcaggtgtgga |
10364164 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
|||||||| |||||||| || | |||||| ||||||||||||||||| ||||||||||||||||| ||| |||||| ||| | | | |||||||| |
|
|
| T |
10364163 |
acttccttttatctcctttcaatagcttctatagagagatcaattcccagatgaagatcatgtgtgaaagcctgcaacattttgaaaagagaaaagatat |
10364064 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagag |
317 |
Q |
| |
|
||| ||||||||||||||| | ||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| |||||| |
|
|
| T |
10364063 |
acttcgtttgcaaactaaaagcacaagggtttcacgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagag |
10363964 |
T |
|
| Q |
318 |
acaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttg |
417 |
Q |
| |
|
|||||||||||||||||||| ||| |||| || | | || ||||| |||||||||||||||||||| ||||||||| | || ||||| || |||| |
|
|
| T |
10363963 |
acaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttg |
10363864 |
T |
|
| Q |
418 |
cacaact |
424 |
Q |
| |
|
| ||||| |
|
|
| T |
10363863 |
cccaact |
10363857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 424
Target Start/End: Original strand, 13289274 - 13289675
Alignment:
| Q |
23 |
tgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagcttc |
122 |
Q |
| |
|
|||||| ||||||||||| |||||||| | ||| || || ||||||| ||||||||||| | |||| | ||||| |||| |||||| |||| | || |
|
|
| T |
13289274 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaagaaacaagctgaaaacatgactaatcaggtttggaacctc |
13289373 |
T |
|
| Q |
123 |
ctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatccttg |
222 |
Q |
| |
|
|||| ||||||||||| || |||| ||||||||||||| ||||||||||| |||||| | || |||| ||||| |||||||| | ||||||||||| |
|
|
| T |
13289374 |
ttttcatctccttttaaaactctctatggagagatcaattcacaaatgaagattatgtgtcaaaggctgcagctttttgcacaacagagagatatccttg |
13289473 |
T |
|
| Q |
223 |
gtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaat |
322 |
Q |
| |
|
| ||||||||| | || | |||||||| |||||| |||||||||||| | || ||| ||||||| ||||||||||| || ||||||||||||| | | |
|
|
| T |
13289474 |
gcttgcaaactgtgagagggagagtttctcttagaacgccttcaagttcaatggtaaataaatctgttatggttggtaggaaggatgataaagagagact |
13289573 |
T |
|
| Q |
323 |
aatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaa |
422 |
Q |
| |
|
|| | |||||| |||| || || |||||| |||| | ||| ||||| || |||||||| |||||||| |||||||| ||||| || ||||| ||| |
|
|
| T |
13289574 |
cattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggtcgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaa |
13289673 |
T |
|
| Q |
423 |
ct |
424 |
Q |
| |
|
|| |
|
|
| T |
13289674 |
ct |
13289675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 424
Target Start/End: Original strand, 13170640 - 13171041
Alignment:
| Q |
23 |
tgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagcttc |
122 |
Q |
| |
|
|||||| ||||||||||| |||||||| | ||| || || | ||||| ||||||||||| | |||||| ||||| |||| |||||| |||| | || |
|
|
| T |
13170640 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaagatacaatctgaaaacatgactaatcaggtttggaacctc |
13170739 |
T |
|
| Q |
123 |
ctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatccttg |
222 |
Q |
| |
|
|||| | ||||||||| | |||| ||||||||||||| ||||||||||| |||||| | || |||||||||| |||||||| | ||||||||||| |
|
|
| T |
13170740 |
ttttcatgtccttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacagagagatatccttg |
13170839 |
T |
|
| Q |
223 |
gtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaat |
322 |
Q |
| |
|
| ||||||||| | || | |||||||| ||||| |||||||||||| | || ||||||||||| |||||||| || || ||||||||||||| | | |
|
|
| T |
13170840 |
gcttgcaaactgtgagcgggagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagagagact |
13170939 |
T |
|
| Q |
323 |
aatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaa |
422 |
Q |
| |
|
|| | |||||| |||| || || |||||| |||| | ||| ||||| ||||||||||| |||||||| |||||||| ||||| || ||||| ||| |
|
|
| T |
13170940 |
cattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaa |
13171039 |
T |
|
| Q |
423 |
ct |
424 |
Q |
| |
|
|| |
|
|
| T |
13171040 |
ct |
13171041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 424
Target Start/End: Original strand, 13332513 - 13332914
Alignment:
| Q |
23 |
tgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagcttc |
122 |
Q |
| |
|
|||||| ||||||||||| |||||||| | ||| || || ||||||| ||||||||||| | |||| | ||||| |||| |||||| |||| | || |
|
|
| T |
13332513 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaagaaacaagctgaaaacatgactaatcaggtttggaacctc |
13332612 |
T |
|
| Q |
123 |
ctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatccttg |
222 |
Q |
| |
|
|||| ||||||||||| | |||| ||||||||||||| ||||||||||| |||||| | || |||||||||| |||||||| | |||||| |||| |
|
|
| T |
13332613 |
ttttcgtctccttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacagagagatattcttg |
13332712 |
T |
|
| Q |
223 |
gtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaat |
322 |
Q |
| |
|
| ||||||||| | | | |||||||| |||||| |||||||||||| | || ||||||||||| ||||||||||| || ||||||||||||| | | |
|
|
| T |
13332713 |
gcttgcaaactgtgagcgcgagagtttctcttagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagact |
13332812 |
T |
|
| Q |
323 |
aatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaa |
422 |
Q |
| |
|
|| | |||||| |||| || || |||||| |||| | | | ||||| ||||||||||| |||||||| |||||||| ||||| || ||||| ||| |
|
|
| T |
13332813 |
cattagtatgttgatatctgacagtggcactaccaatagtagtgttggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaa |
13332912 |
T |
|
| Q |
423 |
ct |
424 |
Q |
| |
|
|| |
|
|
| T |
13332913 |
ct |
13332914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 424
Target Start/End: Original strand, 13160589 - 13160990
Alignment:
| Q |
23 |
tgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagcttc |
122 |
Q |
| |
|
|||||| ||||||||||| |||||||| | ||| || || ||||||| | ||||||||| | |||| | ||||| |||| |||||| |||| | || |
|
|
| T |
13160589 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaagaaacaagctgaaaacatgactaatcaggtttggaacctc |
13160688 |
T |
|
| Q |
123 |
ctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatccttg |
222 |
Q |
| |
|
|||| ||||||||||| | |||| ||||||||||||| ||||||||||| |||||| | || |||||||||| |||||||| | ||||||||||| |
|
|
| T |
13160689 |
ttttcatctccttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacaaagagatatccttg |
13160788 |
T |
|
| Q |
223 |
gtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaat |
322 |
Q |
| |
|
| ||||||||| | | | |||||||| ||||| |||||||||||| | || ||||||||||| ||||||||||| || |||||||| |||| | | |
|
|
| T |
13160789 |
gcttgcaaactgtgagcgcgagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaggagagact |
13160888 |
T |
|
| Q |
323 |
aatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaa |
422 |
Q |
| |
|
| | |||||| |||| || || |||||| |||| | ||| ||||| ||||||||||| |||||||| |||||||| ||||| || ||||| ||| |
|
|
| T |
13160889 |
cgttagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaa |
13160988 |
T |
|
| Q |
423 |
ct |
424 |
Q |
| |
|
|| |
|
|
| T |
13160989 |
ct |
13160990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 239 - 424
Target Start/End: Original strand, 10260523 - 10260708
Alignment:
| Q |
239 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta |
338 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10260523 |
tggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgcta |
10260622 |
T |
|
| Q |
339 |
tcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaact |
424 |
Q |
| |
|
||| |||| || | || || ||||| ||||||||||||||||| || ||||||||| | || ||||| || ||||| ||||| |
|
|
| T |
10260623 |
tcacagagagaaacaaccaacaataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaact |
10260708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 151 - 424
Target Start/End: Original strand, 13343826 - 13344099
Alignment:
| Q |
151 |
gagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatccttggtttgcaaactaaaattggtaaagtttc |
250 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| | || |||| |||| |||||||| | |||||||||||| ||||||||| | || | |||||| |
|
|
| T |
13343826 |
gagagatcaattcacaaatgaagattatgtgtcaaaggctgcagatttttgcacaacagagagatatccttggcttgcaaactgtgagcgggagagtttc |
13343925 |
T |
|
| Q |
251 |
tcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgctatcagagagcagc |
350 |
Q |
| |
|
|| ||||| |||||||||||| | || ||||||||||| ||||||||||| || ||||||||||||| | | || | |||||| |||| || || || |
|
|
| T |
13343926 |
tctaagaacaccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggc |
13344025 |
T |
|
| Q |
351 |
actaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaact |
424 |
Q |
| |
|
|||| |||| | ||| ||||| ||||||||||| |||||||| |||||||| ||||| || ||||| ||||| |
|
|
| T |
13344026 |
actaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaact |
13344099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 424
Target Start/End: Original strand, 10126753 - 10126938
Alignment:
| Q |
239 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta |
338 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10126753 |
tggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgcta |
10126852 |
T |
|
| Q |
339 |
tcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaact |
424 |
Q |
| |
|
|| |||| ||| |||| ||||| ||||||||||||||||| || ||||||||| | || ||||| || ||||| ||||| |
|
|
| T |
10126853 |
tctcagagagacacatcccataataatataggtgttgttgcaattttgggcatgggaggtttgggaaaaactacccttgcccaact |
10126938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 424
Target Start/End: Original strand, 10663351 - 10663536
Alignment:
| Q |
239 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta |
338 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| || ||||||||| ||||||| ||||| || | ||| ||||||||||||||||||||||||||| |
|
|
| T |
10663351 |
tggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctctcatggtgggtaggaagggtgacaaagagacaataatgaacatgttgcta |
10663450 |
T |
|
| Q |
339 |
tcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaact |
424 |
Q |
| |
|
||| |||| ||| | |||| ||||| ||||||||||||||||| || ||||||||| | || ||||| || ||||| ||||| |
|
|
| T |
10663451 |
tcacagagagacacaacccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaact |
10663536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 424
Target Start/End: Original strand, 10527168 - 10527347
Alignment:
| Q |
247 |
tttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaaga-gacaataatgaacatgttgctatcaga-- |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||||||||||||| ||| | || || |||||| ||||||| |
|
|
| T |
10527168 |
tttctcgtagaaccccttcaagttcagtggtaaatgaatctgtcattgtgggtaggaatgatgataaagatgac--tcatcaatatgttggtatcagact |
10527265 |
T |
|
| Q |
344 |
-gagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaact |
424 |
Q |
| |
|
||| || ||| ||||| ||| | |||||||||||||| || |||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
10527266 |
gtggcaccagtagaaataataatttaggtgttgttgcaatcttgggtatgggaggtgtcggtaaaacaacccttgcacaact |
10527347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 239 - 424
Target Start/End: Original strand, 10500378 - 10500566
Alignment:
| Q |
239 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta |
338 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| | | | | || |||||| || |
|
|
| T |
10500378 |
tggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaatgatgataaagatagactcgtcaatatgttggta |
10500477 |
T |
|
| Q |
339 |
tcagagagcagcac---taggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaact |
424 |
Q |
| |
|
||||| | | || || ||||| ||| | ||||||||||||||||| ||||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
10500478 |
tcagatattggaacaggcagaaataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaact |
10500566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 424
Target Start/End: Original strand, 10031828 - 10032013
Alignment:
| Q |
239 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta |
338 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| || ||||||||| ||||||| ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10031828 |
tggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctctcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgcta |
10031927 |
T |
|
| Q |
339 |
tcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaact |
424 |
Q |
| |
|
||| |||| | | |||| ||||| ||||||||||||||||| || ||||||||| | || ||||| || ||||| ||||| |
|
|
| T |
10031928 |
tcacagagagacgcatcccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaact |
10032013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 424
Target Start/End: Original strand, 10184067 - 10184252
Alignment:
| Q |
239 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta |
338 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
10184067 |
tggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctg |
10184166 |
T |
|
| Q |
339 |
tcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaact |
424 |
Q |
| |
|
||| |||| ||| | |||| ||| ||||||||||||||||| || ||||||||| | || ||||| || ||||| ||||| |
|
|
| T |
10184167 |
tcacagagagacacaacccataatgctataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaact |
10184252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 421
Target Start/End: Complemental strand, 11782244 - 11782065
Alignment:
| Q |
245 |
agtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgctatcagag |
344 |
Q |
| |
|
||||||| ||||||||||||||||||||| | ||| |||||| | |||| ||||| |||||||||||||| | | | || || ||| || ||||||| |
|
|
| T |
11782244 |
agtttcttctagaaccccttcaagttcagtgctaaatcaatctgacgtggtgggtaggaatgatgataaagatagactcatcaatatgctgatatcagac |
11782145 |
T |
|
| Q |
345 |
agcagcactagga---ataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcaca |
421 |
Q |
| |
|
||||||| || | |||| ||| | |||||||| |||||||| ||||||||||| || ||||||||||| |||||||| |
|
|
| T |
11782144 |
cgcagcaccagcagaaataataatttaggtgttgtcgcaattttgggtatgggaggcgtcggtaaaacgacccttgcaca |
11782065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 421
Target Start/End: Original strand, 10517292 - 10517471
Alignment:
| Q |
245 |
agtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgctatcagag |
344 |
Q |
| |
|
||||||| |||||||| ||||||||| || | |||||||||| | |||| ||||| |||||||||||||| | | | || || |||||| ||||||| |
|
|
| T |
10517292 |
agtttcttctagaaccctttcaagttcggtgctaaatgaatctgacgtggtgggtaggaatgatgataaagatagactcatcaatatgttggtatcagat |
10517391 |
T |
|
| Q |
345 |
agcagcactagga---ataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcaca |
421 |
Q |
| |
|
|||| || | |||| ||| | ||||||| ||||||| | ||||||||||| || ||||||||||| |||||||| |
|
|
| T |
10517392 |
gttggcacaagcagaaataataatttaggtgttgctgcaattgtgggtatgggaggcgtcggtaaaacgacccttgcaca |
10517471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 26906502 - 26906907
Alignment:
| Q |
19 |
tctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggag |
118 |
Q |
| |
|
||||||||| ||||| ||||| ||| ||||||||||||| || |||||||||| || |||||||||||| | ||||||||||| |||||||| || |
|
|
| T |
26906502 |
tctttgatgttgaggacttgctcaacgaaattagttatgattccctgcgatgcaaagtcgagaatacacaagctcaaaacaaaactaatcaggtgttgaa |
26906601 |
T |
|
| Q |
119 |
cttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatc |
218 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||| ||| ||||| | || |||||||||||||||||| |
|
|
| T |
26906602 |
cttcctttcatctccttttaatagcttctacagagagatcaattctcaaatgaagataatgtgtgaaagcctgcaattgtttgcacaacataaagatatc |
26906701 |
T |
|
| Q |
219 |
cttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagaga |
318 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||| |
|
|
| T |
26906702 |
cttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagaga |
26906801 |
T |
|
| Q |
319 |
caataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgc |
418 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| | |||| ||||| ||||||||||||||||| || ||||||||| | || ||||| || ||||| |
|
|
| T |
26906802 |
caataatgaatatgttgctatcagagagagacacaacccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgc |
26906901 |
T |
|
| Q |
419 |
acaact |
424 |
Q |
| |
|
||||| |
|
|
| T |
26906902 |
ccaact |
26906907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 44958171 - 44957768
Alignment:
| Q |
21 |
tttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagct |
120 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| || |||| ||||| ||||||||||||||| | |||||||||| |||||| |||| || |
|
|
| T |
44958171 |
tttgatgccgaggatttgctcaaccaaattagctatgattccctgcgttgcaaagtggagaatacacaagttgccaacaaaactaatcaggtctggaact |
44958072 |
T |
|
| Q |
121 |
tcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatcct |
220 |
Q |
| |
|
||||||| ||||||||||| | |||||| ||||||||||||| ||||||||||| |||||||| | |||||||||| ||||| ||||||||||| | |
|
|
| T |
44958071 |
tcctttcatctccttttaaaaacttctatggagagatcaattctcaaatgaagattatgtgtgaatccctgcaactttttgcacagcataaagatataat |
44957972 |
T |
|
| Q |
221 |
tggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagaca |
320 |
Q |
| |
|
||||||| ||||||||| || || |||||||| |||||| ||||||||||||| |||||||||||| | ||||| || || || |||||||||| | | |
|
|
| T |
44957971 |
tggtttggaaactaaaagtgctagagtttctcatagaacaccttcaagttcaggggttaatgaatctattatggtgggcaggaaacatgataaagataga |
44957872 |
T |
|
| Q |
321 |
ataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcac |
420 |
Q |
| |
|
| || | ||| || ||||||| |||| || || ||||| ||| | ||||||||||| | ||||||||||||||||| ||||||||||| || |||| |
|
|
| T |
44957871 |
ctcatagatatgctggtatcagacagcaccagcagaaataataatttaggtgttgttgccaccttaggtatgggaggtgtcggtaaaacgactctcgcac |
44957772 |
T |
|
| Q |
421 |
aact |
424 |
Q |
| |
|
|||| |
|
|
| T |
44957771 |
aact |
44957768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 11484840 - 11484916
Alignment:
| Q |
240 |
ggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaaga |
316 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||| || ||||||||||| ||||| || || ||||| |||||||| |
|
|
| T |
11484840 |
ggtagagtttctcgtagaacaccatcaagttcagtggtgaatgaatctgttatggtgggaaggaatgaagataaaga |
11484916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 11484972 - 11485027
Alignment:
| Q |
369 |
ggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaact |
424 |
Q |
| |
|
||||||||||||||||| | ||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
11484972 |
ggtgttgttgcaattttggttatgggaggcgtcggtaaaacgacccttgcacaact |
11485027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 424
Target Start/End: Complemental strand, 146399 - 145998
Alignment:
| Q |
23 |
tgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagcttc |
122 |
Q |
| |
|
|||||| ||||||||||| |||||||| | ||| || || ||||||| | ||||||||| | |||| | ||||| |||| |||||| |||| | || |
|
|
| T |
146399 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaagaaacaagctgaaaacatgactaatcaggtttggaacctc |
146300 |
T |
|
| Q |
123 |
ctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatccttg |
222 |
Q |
| |
|
|||| ||||||||||| | |||| ||||||||||||| ||||||||||| |||||| | || |||||||||| |||||||| | ||||||||||| |
|
|
| T |
146299 |
ttttcatctccttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacagagagatatccttg |
146200 |
T |
|
| Q |
223 |
gtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaat |
322 |
Q |
| |
|
| ||||||||| | || | |||||||| ||||| |||||||||||| | || ||||||||||| ||||||||||| || ||||||||||||| | | |
|
|
| T |
146199 |
gcttgcaaactgtgagcgggagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagact |
146100 |
T |
|
| Q |
323 |
aatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaa |
422 |
Q |
| |
|
|| | |||||| |||| || || |||||| |||| | ||| ||||| ||||||||||| |||||||| |||||||| ||||| || ||||| ||| |
|
|
| T |
146099 |
cattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaa |
146000 |
T |
|
| Q |
423 |
ct |
424 |
Q |
| |
|
|| |
|
|
| T |
145999 |
ct |
145998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 424
Target Start/End: Complemental strand, 136348 - 135947
Alignment:
| Q |
23 |
tgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagcttc |
122 |
Q |
| |
|
|||||| ||||||||||| |||||||| | ||| || || | ||||| ||||||||||| | |||||| ||||| |||| |||||| |||| | || |
|
|
| T |
136348 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaagatacaatctgaaaacatgactaatcaggtttggaacctc |
136249 |
T |
|
| Q |
123 |
ctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatatccttg |
222 |
Q |
| |
|
|||| | ||||||||| | |||| ||||||||||||| ||||||||||| |||||| | || |||||||||| |||||||| | ||||||||||| |
|
|
| T |
136248 |
ttttcatgtccttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgtcaaaggctgcaactttttgcacaacagagagatatccttg |
136149 |
T |
|
| Q |
223 |
gtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaat |
322 |
Q |
| |
|
| ||||||||| | || | |||||||| ||||| |||||||||||| | || ||||||||||| |||||||| || || ||||||||||||| | | |
|
|
| T |
136148 |
gcttgcaaactgtgagcgggagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagagagact |
136049 |
T |
|
| Q |
323 |
aatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcacaa |
422 |
Q |
| |
|
|| | |||||| |||| || || |||||| |||| | ||| ||||| ||||||||||| |||||||| |||||||| ||||| || ||||| ||| |
|
|
| T |
136048 |
cattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaa |
135949 |
T |
|
| Q |
423 |
ct |
424 |
Q |
| |
|
|| |
|
|
| T |
135948 |
ct |
135947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 409
Target Start/End: Complemental strand, 31680110 - 31679807
Alignment:
| Q |
106 |
gtcaggtgtggagcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcaca |
205 |
Q |
| |
|
||||||| |||| |||||||| ||||||||| | | ||| || |||||||||||||||||||||||| ||| ||| || | |||||||| ||||| |
|
|
| T |
31680110 |
gtcaggtttggaatttcctttcatctccttttcaaaacttgtatggagagatcaattcccaaatgaagagtatgattgaaaggctccaactttttgcaca |
31680011 |
T |
|
| Q |
206 |
acataaagatatccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaat |
305 |
Q |
| |
|
||| |||||||||||||| ||||||||| || ||||| |||| || |||||| |||||||||||| |||| || ||||| ||||||||||||| || |
|
|
| T |
31680010 |
acaaaaagatatccttgggttgcaaactgtaagtggtagggtttttcttagaacaccttcaagttcactagtagatcaatctttcatggttggtaggaag |
31679911 |
T |
|
| Q |
306 |
gatgataaagagacaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgttggta |
405 |
Q |
| |
|
||||||||||| | ||| || |||||||||||||| |||||| ||| | ||||| ||||||| ||||||| || ||||||||||| |||| |
|
|
| T |
31679910 |
agtgataaagagaaactaactaatatgttgctatcagatgttagcactgtcaatgataatattaatgttgtttcaattttcggcatgggaggtgtcggta |
31679811 |
T |
|
| Q |
406 |
aaac |
409 |
Q |
| |
|
|||| |
|
|
| T |
31679810 |
aaac |
31679807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 50270 - 49981
Alignment:
| Q |
18 |
gtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtgga |
117 |
Q |
| |
|
||||||||||| ||||| ||||| | | |||| |||||||| || |||||||||||||||||||| || || | || ||||| | ||||||| || |
|
|
| T |
50270 |
gtctttgatgctgaggacttgctcagcgaaatcagttatgattccctgcgatgcaaggtggagaatgcaaaagctcaaagcaaaatttatcaggtgatga |
50171 |
T |
|
| Q |
118 |
gcttcctttcttctccttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaacttttcgcacaacataaagatat |
217 |
Q |
| |
|
|||| |||| ||| ||||||| | || | |||||||||||||||| ||||||||||||||||| ||| |||||||||| | | || |||||||| |
|
|
| T |
50170 |
acttcttttcatcttcttttaaaaact---atggagagatcaattcccagatgaagatcatgtgtgaaagcctgcaactttttgaaaaaagaaaagatat |
50074 |
T |
|
| Q |
218 |
ccttggtttgcaaactaaaattggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatga |
310 |
Q |
| |
|
||| ||||||||||||||| | ||||| |||||||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| |
|
|
| T |
50073 |
acttcgtttgcaaactaaaagcacaagggtttcacgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga |
49981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 314
Target Start/End: Complemental strand, 17853191 - 17853116
Alignment:
| Q |
239 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaa |
314 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || || ||||||||||||||||| || || |||||||||||| |
|
|
| T |
17853191 |
tggtagagtttctcgtagaaccccttcaagttccgtggtaaatgaatctgtcatggtaggaaggaatgatgataaa |
17853116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 17853070 - 17853006
Alignment:
| Q |
357 |
aataacaatatcggtgttgttgcaattttaggtatgggaggtgttggtaaaacgacacttgcaca |
421 |
Q |
| |
|
||||||||| | |||||||||||||| || || ||||||||||| ||||||||||| |||||||| |
|
|
| T |
17853070 |
aataacaatttaggtgttgttgcaatattggggatgggaggtgtcggtaaaacgacccttgcaca |
17853006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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