View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14764_low_4 (Length: 236)
Name: NF14764_low_4
Description: NF14764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14764_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29819390 - 29819610
Alignment:
| Q |
1 |
tttagaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaatcatgcatccccaattta |
100 |
Q |
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| T |
29819390 |
tttagaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaatcatgcatccccaattta |
29819489 |
T |
|
| Q |
101 |
ttattgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29819490 |
ttattgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttat |
29819589 |
T |
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| Q |
201 |
ctatcttcattcccttgaaga |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
29819590 |
ctatcttcattcccttgaaga |
29819610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29827633 - 29827853
Alignment:
| Q |
1 |
tttagaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaatcatgcatccccaattta |
100 |
Q |
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|||||||||||| ||||||| | |||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
29827633 |
tttagaccataatctgctacgtttgcctggatcatttggagattcctgaattacaatattccttcccatttcttgaagcaaatcatgcatccccagttta |
29827732 |
T |
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| Q |
101 |
ttattgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttat |
200 |
Q |
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| T |
29827733 |
ttattgacacgatctagagttatcaaagatctgtctatcaaaacttgaattgtaatttcggggtgatatccacaattttctaatatatttattactttat |
29827832 |
T |
|
| Q |
201 |
ctatcttcattcccttgaaga |
221 |
Q |
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|| |||||||||||||||||| |
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| T |
29827833 |
ctctcttcattcccttgaaga |
29827853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 29572639 - 29572422
Alignment:
| Q |
4 |
agaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaatcatgcatccccaatttatta |
103 |
Q |
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|||||| |||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29572639 |
agaccacaacctgctacgtctacaaggatcatttggagattcctgaaatacaatatccctgcccatttcttgaagcaaatcatgcattcccaatttatta |
29572540 |
T |
|
| Q |
104 |
ttgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttatcta |
203 |
Q |
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|| || ||||||||||||||| ||||| |||||||||| ||||||| ||||| |||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
29572539 |
ttcacagaatctagagttatcaatgatctttcaatcaaaatttgaattccaatttgagggaaatagccacaactttctaatatatctataactttatctc |
29572440 |
T |
|
| Q |
204 |
tcttcattcccttgaaga |
221 |
Q |
| |
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|||||||||||| |||| |
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| T |
29572439 |
ccttcattcccttaaaga |
29572422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 35686399 - 35686356
Alignment:
| Q |
53 |
acaatattcctgcccatttcttgaagcaaatcatgcatccccaa |
96 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||| |
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| T |
35686399 |
acaatatttctacccatttcttgaagcaaatcatgcatccccaa |
35686356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 11123611 - 11123828
Alignment:
| Q |
4 |
agaccataacctgctacatctgccaggatcatttggagattcctgaaatacaatattcctgcccatttcttgaagcaaatcatgcatccccaatttatta |
103 |
Q |
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|||||||||||| || | | | |||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
11123611 |
agaccataacctactgcgttttccaggatcatttggagattcttcaaacacaatattccttcccatttcttgaagcaaatcatgcatccacaacttattg |
11123710 |
T |
|
| Q |
104 |
ttgacccgatctagagttatcaaagatctgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttatcta |
203 |
Q |
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| ||| ||| | |||| ||||||||| |||||||||| | |||| ||||||||| |||||||||| |||||| || |||||||||| ||||| |
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| T |
11123711 |
tcccccctatccaaagttgccaaagatctttcaatcaaaatgtcaattccaattttgggatgataaccacaaccttctaaaatttctattacttcatcta |
11123810 |
T |
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| Q |
204 |
tcttcattcccttgaaga |
221 |
Q |
| |
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| | |||||| ||||||| |
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| T |
11123811 |
tgtccattcctttgaaga |
11123828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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