View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14764_low_5 (Length: 232)
Name: NF14764_low_5
Description: NF14764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14764_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 45269150 - 45269350
Alignment:
| Q |
23 |
actcagtcattcataaggttttatacttttatgttaagctacttcttcatggctaacaaaattcctcgagcgaagccagttcacttcttcaagatcatac |
122 |
Q |
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| T |
45269150 |
actcagtcattcataaggttttatacttttatgttaagctacttcttaatggctaacaaaattcctcgagcgaagccagttcacttcttcaagatcatac |
45269249 |
T |
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| Q |
123 |
ttactcaaaaccttcatcatggaaagcttgtaagccaatttgagttatagattgttcctgtagtttctgtttttatatatcttataacataatgatgatg |
222 |
Q |
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| T |
45269250 |
ttactcaaaaccttcatcatggaaagcttgtaagccaatttgagttatagattgttcctgtagtttctgtttttatatatcttataacataatgatgatg |
45269349 |
T |
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| Q |
223 |
t |
223 |
Q |
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| T |
45269350 |
t |
45269350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 16867523 - 16867577
Alignment:
| Q |
104 |
cacttcttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagcc |
158 |
Q |
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| T |
16867523 |
cactttttcaagatcatacttgctcaaaatcttcatgaaggaaaacttgtaagcc |
16867577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 16872283 - 16872337
Alignment:
| Q |
104 |
cacttcttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagcc |
158 |
Q |
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| T |
16872283 |
cactttttcaagataatacttgctcaaaatcttcatgaaggaaagcttgtaagcc |
16872337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 16862123 - 16862187
Alignment:
| Q |
94 |
gaagccagttcacttcttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagcc |
158 |
Q |
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| T |
16862123 |
gaagccaatccactttttcaagataatacttgctcaaaatcttcaggaaggaaagcttgtaagcc |
16862187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 17605064 - 17605112
Alignment:
| Q |
110 |
ttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagcc |
158 |
Q |
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| T |
17605064 |
ttcaagatcatacttgctcaaaaccttctccaaggaaaccttgtaagcc |
17605112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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