View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14765_high_2 (Length: 328)
Name: NF14765_high_2
Description: NF14765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14765_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 311
Target Start/End: Complemental strand, 42685863 - 42685558
Alignment:
| Q |
6 |
aagaatatgataaggagatagaaccctagaattttgaacgatcgaaaacaagcacctacgaaacccattagagaaaccacaaagaggaaaatgccgaaga |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42685863 |
aagaataggataaggagatagaaccctagaattttgaacgatcgaaaacaagcacctacgaaacccattagagaaaccacaaagaggaaaatgccgaaga |
42685764 |
T |
|
| Q |
106 |
gaataacatgtttttcgtacgaagcatcgcatgctgttttgacttcttctgttctccatgcttctaaacccaaattcaatactggaatggaaaccattag |
205 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42685763 |
gaataacatgtttttcatacgaagcatcgcatgctgttttgacttcttctgttctccatgcttctaaacccaaattcaatactggaatggaaaccattag |
42685664 |
T |
|
| Q |
206 |
agctaataagctaaggactccggtcaagatattgttgaattcactatcttcgtattgnnnnnnnngtttataatctatttccttgataccattgttgggt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
42685663 |
agctaataagctaaggactccggtcaagatattgttgaattcactatcttcgtattgttttttttgtttataatctatttccttgataccattgttggct |
42685564 |
T |
|
| Q |
306 |
agtttg |
311 |
Q |
| |
|
|||||| |
|
|
| T |
42685563 |
agtttg |
42685558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University