View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14765_low_1 (Length: 549)
Name: NF14765_low_1
Description: NF14765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14765_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 533
Target Start/End: Complemental strand, 25606424 - 25605905
Alignment:
| Q |
11 |
gcagcagagactctggagccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggacctg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25606424 |
gcagcagagactctggagccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggtcctg |
25606325 |
T |
|
| Q |
111 |
ttgctgttgcaattgcttcaactaattcctcttcacagaatacctgaaaatgaagcatgcatgaatcagcacttatattcttgttgtggaagaaatttga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
25606324 |
ttgctgttgcaattgcttcaactaattcctcttcacagaatacctgaaaatgaagcatgcatgaatcagcacttatattcttgttatggaagaaatttga |
25606225 |
T |
|
| Q |
211 |
ggagaatgcatcaagatgtcaaacgactcaccttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaattccagttctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25606224 |
ggagaatgcatcaagatgtcaaacgactcaccttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaattccagttctt |
25606125 |
T |
|
| Q |
311 |
gataacattgtatggtccatcatgaatttcaacctcaattgtgtatcctccattgtttatcaggaagatgatggttttctgaccacacctcagcattgtc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25606124 |
gataacattgtatggtccatcatgaatttcaacctcaattgtgtatcctccattgtttatcaggaagatgatggttttctgaccacacctcagcattgtc |
25606025 |
T |
|
| Q |
411 |
gacacatcctgtgcagttacctgtaaagcatttaataagagaaaggttaaacaaacaatgttcaagaaaaaattacaagttgaatgaattcatgctttaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25606024 |
gacacatcctgtgcagttacctgtaaagcatt---taagagaaaggttaaacaaacaatgttcaagaaaaaattacaagttgaatgaattcatgctttaa |
25605928 |
T |
|
| Q |
511 |
gcagttatgcaagacaaacctga |
533 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
25605927 |
gcagttatgcaagacaaacctga |
25605905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 11 - 533
Target Start/End: Complemental strand, 25626065 - 25625546
Alignment:
| Q |
11 |
gcagcagagactctggagccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggacctg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
25626065 |
gcagcagagactctggagccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggtcctg |
25625966 |
T |
|
| Q |
111 |
ttgctgttgcaattgcttcaactaattcctcttcacagaatacctgaaaatgaagcatgcatgaatcagcacttatattcttgttgtggaagaaatttga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25625965 |
ttgctgttgcaattgcttcaactaattcctcttcacagaatacctgaaaatgaagcatgcatgaatcagcacttatattcttgttatggaagaaatttga |
25625866 |
T |
|
| Q |
211 |
ggagaatgcatcaagatgtcaaacgactcaccttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaattccagttctt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25625865 |
tgagaatgcatcaagatgtcaaacgactcaccttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaattccagttctt |
25625766 |
T |
|
| Q |
311 |
gataacattgtatggtccatcatgaatttcaacctcaattgtgtatcctccattgtttatcaggaagatgatggttttctgaccacacctcagcattgtc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25625765 |
gataacattgtatggtccatcatgaatttcaacctcaattgtgtatcctccattgtttatcaggaagatgatggttttctgaccacacctcagcattgtc |
25625666 |
T |
|
| Q |
411 |
gacacatcctgtgcagttacctgtaaagcatttaataagagaaaggttaaacaaacaatgttcaagaaaaaattacaagttgaatgaattcatgctttaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25625665 |
gacacatcctgtgcagttacctgtaaagcatt---taagagaaaggttaaacaaacaatgttcaagaaaaaattacaagttgaatgaattcatgctttaa |
25625569 |
T |
|
| Q |
511 |
gcagttatgcaagacaaacctga |
533 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
25625568 |
gtagttatgcaagacaaacctga |
25625546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 240 - 424
Target Start/End: Complemental strand, 20436482 - 20436298
Alignment:
| Q |
240 |
accttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaattccagttcttgataacattgtatggtccatcatgaattt |
339 |
Q |
| |
|
|||||||| ||||| || | ||||| ||||||||| || ||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
20436482 |
accttggtggtccagcaatgtccttgaccattgtggatagcatcaactaagccagtgtaattccagttcttgatcacattgtatggtccatcatggattt |
20436383 |
T |
|
| Q |
340 |
caacctcaattgtgtatcctccattgtttatcaggaagatgatggttttctgaccacacctcagcattgtcgacacatcctgtgc |
424 |
Q |
| |
|
|||| ||||| |||||||| |||||||| |||| |||||| ||||| ||||||||||| ||||||||||| || ||||||||||| |
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|
| T |
20436382 |
caacttcaatagtgtatccaccattgttaatcaagaagattatggtcttctgaccacatctcagcattgtggaaacatcctgtgc |
20436298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 20436739 - 20436621
Alignment:
| Q |
29 |
ccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggacctgttgctgttgcaattgctt |
128 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| || ||| |||| ||||||||||| ||||||||| |
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|
| T |
20436739 |
ccccactcaagcaactctttgctagtgtcatccttgtgaacaatcacctcaataaagcataagcaattcttcattggtcctgttgctgtctcaattgctt |
20436640 |
T |
|
| Q |
129 |
caactaattcctcttcaca |
147 |
Q |
| |
|
|||| | ||||||||||| |
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|
| T |
20436639 |
caacaagctcctcttcaca |
20436621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 260 - 424
Target Start/End: Complemental strand, 5332609 - 5332445
Alignment:
| Q |
260 |
tccttcaccattgtgaattgcatcaatcaatccagtgtaattccagttcttgataacattgtatggtccatcatgaatttcaacctcaattgtgtatcct |
359 |
Q |
| |
|
||||| ||||||||| || ||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||| |
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|
| T |
5332609 |
tccttgaccattgtggatagcatcaactaagccagtgtaattccagttcttgatcacattgtatggtccatcatggatttcaacttcaatagtgtatcca |
5332510 |
T |
|
| Q |
360 |
ccattgtttatcaggaagatgatggttttctgaccacacctcagcattgtcgacacatcctgtgc |
424 |
Q |
| |
|
|||||||| |||| |||||| ||||| ||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
5332509 |
ccattgttaatcaagaagattatggtcttctgaccacatctcagcattgtggaaacatcctgtgc |
5332445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 5332886 - 5332768
Alignment:
| Q |
29 |
ccccactcaagcaactctttgcttgtgtcatccttgtgaacaatcacttcaatgaaacataagctatctttctttggacctgttgctgttgcaattgctt |
128 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| | ||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
5332886 |
ccccattcaagcaactctttgctagtgtcatccttgtgaacaatcacctcaatgaagcataaacaatccttctttggtcctgttgctgtttcaattgctt |
5332787 |
T |
|
| Q |
129 |
caactaattcctcttcaca |
147 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
5332786 |
caacaagctcctcttcaca |
5332768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 4627360 - 4627283
Alignment:
| Q |
306 |
ttcttgataacattgtatggtccatcatgaatttcaacctcaattgtgtatcctccattgtttatcaggaagatgatg |
383 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| |||||||| || ||||||||||| || |||||||||||| |
|
|
| T |
4627360 |
ttcttgatcacattgtatggaccatcatgaatctcaacttcaattgtataacctccattgttaatgaggaagatgatg |
4627283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 237 - 383
Target Start/End: Complemental strand, 1880012 - 1879866
Alignment:
| Q |
237 |
ctcaccttggtagtccaacattttccttcaccattgtgaattgcatcaatcaatccagtgtaattccagttcttgataacattgtatggtccatcatgaa |
336 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||| |||| ||||| | ||||| || ||||| || || || |||||||| || |||||||||| |
|
|
| T |
1880012 |
ctcaccttggcagtaaaacactttccttcaccattgtctattgtttcaattagtccagcatagttccaattttttatcacattgtaaggcccatcatgaa |
1879913 |
T |
|
| Q |
337 |
tttcaacctcaattgtgtatcctccattgtttatcaggaagatgatg |
383 |
Q |
| |
|
|||| ||||| ||||||| || |||||||| || || ||||||||| |
|
|
| T |
1879912 |
tttctgcctcagttgtgtaaccaccattgttgattagaaagatgatg |
1879866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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