View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14765_low_3 (Length: 431)

Name: NF14765_low_3
Description: NF14765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14765_low_3
NF14765_low_3
[»] chr5 (1 HSPs)
chr5 (27-252)||(36514184-36514413)
[»] chr4 (3 HSPs)
chr4 (252-422)||(41451087-41451257)
chr4 (252-422)||(25754028-25754197)
chr4 (258-322)||(16596259-16596323)
[»] chr7 (3 HSPs)
chr7 (270-422)||(18104080-18104232)
chr7 (259-361)||(46253009-46253113)
chr7 (252-296)||(22962526-22962570)
[»] chr1 (1 HSPs)
chr1 (49-215)||(4233508-4233678)
[»] chr3 (2 HSPs)
chr3 (256-361)||(36840717-36840822)
chr3 (256-296)||(49603320-49603360)
[»] chr8 (4 HSPs)
chr8 (252-296)||(12587767-12587811)
chr8 (256-305)||(34054155-34054204)
chr8 (252-288)||(27324875-27324911)
chr8 (261-305)||(29283688-29283732)
[»] chr6 (1 HSPs)
chr6 (252-296)||(6900343-6900387)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 252
Target Start/End: Original strand, 36514184 - 36514413
Alignment:
Q  27 ttttaaaaagattattagaaagaaattgaaatatgc----atatatacctgtcgaggatcttttatttcttggaaatcttgttgatcatcatcgaaatcg 122  Q
    ||||||| ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  36514184 ttttaaacagattattagaaagaaattgaaatatgcatgcatatatacctgtcgaggatcttttatttcttgaaaatcttgttcatcatcatcggaatcg 36514283  T
Q  123 ggtatactttcatcggacttgatatcctcctcgtgcagtgccttgatgatagattctctggttttctttagctcttcatgatcctcctccgtaggcgggt 222  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36514284 ggtatactttcattggacctgatatcctcctcgtgcagtgccttgatgatagattctctggttttctttagctcttcatgatcctcctccgtaggcgggt 36514383  T
Q  223 cctcctcacgatatccttctccttcaaacc 252  Q
    ||||||| ||||||||||||||||||||||    
T  36514384 cctcctcgcgatatccttctccttcaaacc 36514413  T

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Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 252 - 422
Target Start/End: Complemental strand, 41451257 - 41451087
Alignment:
Q  252 caggggcggagccactcacatcagtgtgggggctcctgcctgcactattattttcaatccaatatatataccagccactttggggtgctttatttttaag 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41451257 caggggcggagccactcacatcagtgtgggggctcctgcctgcactattattttcaatccaatatatataccagccactttggggtgctttatttttaag 41451158  T
Q  352 ggaactttggggtagttttaattagttaaaattttaatcagtttccttaccagcaatccaacgcatgagaa 422  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41451157 ggaactttggggtagttttaattagttaaaattttaatcaatttccttaccagcaatccaacgcatgagaa 41451087  T

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Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 252 - 422
Target Start/End: Complemental strand, 25754197 - 25754028
Alignment:
Q  252 caggggcggagccactcacatcagtgtgggggctcctgcctgcactattattttcaatccaatatatataccagccactttggggtgctttatttttaag 351  Q
    ||||||||||||||||| |||| |||||||| |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25754197 caggggcggagccactctcatctgtgtgggg-ctcctgtctgcaccactattttcaatccaatatatataccagccactttggggtgctttatttttaag 25754099  T
Q  352 ggaactttggggtagttttaattagttaaaattttaatcagtttccttaccagcaatccaacgcatgagaa 422  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  25754098 ggaactttggggtagttttaattggttaaaattttaatcagtttccttaccagcaatccaacacatgagaa 25754028  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 16596259 - 16596323
Alignment:
Q  258 cggagccactcacatcagtgtgggggctcctgcctgcactattattttcaatccaatatatatac 322  Q
    ||||||||||||||||| ||| |||||| |||||||||||| |||||| |||| |||||||||||    
T  16596259 cggagccactcacatcactgtaggggctactgcctgcactactattttaaatctaatatatatac 16596323  T

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Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 270 - 422
Target Start/End: Complemental strand, 18104232 - 18104080
Alignment:
Q  270 catcagtgtgggggctcctgcctgcactattattttcaatccaatatatataccagccactttggggtgctttatttttaagggaactttggggtagttt 369  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18104232 catcagggtgggggctcctgcctgcactactattttcaatccaatatatataccagccactttggggtgctttatttttaagggaactttggggtagttt 18104133  T
Q  370 taattagttaaaattttaatcagtttccttaccagcaatccaacgcatgagaa 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18104132 taattagttaaaattttaatcagtttccttaccagcaatccaacgcatgagaa 18104080  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 361
Target Start/End: Complemental strand, 46253113 - 46253009
Alignment:
Q  259 ggagccactcacatcagtgtgggggctcctgcctg-cacta-ttattttcaatccaatatatataccagccactttggggtgctttatttttaagggaac 356  Q
    |||||||||||||||| |||||||||||  ||||| |  || ||||||| || ||||| ||||||| || || ||||||||||| |||||| ||||||||    
T  46253113 ggagccactcacatcattgtgggggctcacgcctgtcggtacttattttaaaaccaatgtatatactagtcattttggggtgctatattttcaagggaac 46253014  T
Q  357 tttgg 361  Q
    |||||    
T  46253013 tttgg 46253009  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 22962526 - 22962570
Alignment:
Q  252 caggggcggagccactcacatcagtgtgggggctcctgcctgcac 296  Q
    ||||||| ||||||||||||| | |||||||||||||||||||||    
T  22962526 caggggcagagccactcacatgattgtgggggctcctgcctgcac 22962570  T

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Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 4233678 - 4233508
Alignment:
Q  49 aaattgaaatatgcatatatacctgtcgaggatcttttatttcttggaaatcttgttgatcatcatcgaaatcgggtatactttcatcggacttgatatc 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||  |||||||||| ||||| ||||| |||||||    
T  4233678 aaattcaaatatgcatatatacctgtcgaggatcttttatttcttcaaaatcttgttcatcatcatcggtatcgggtataatttcaccggacctgatatc 4233579  T
Q  149 ctcctcgtgcagtgccttgatgatagattctc----tggttttctttagctcttcatgatcctcctccgta 215  Q
    ||||||||||| | ||||   |  ||||||||    |||||||||||||||||||| ||||||||||||||    
T  4233578 ctcctcgtgcattaccttagcgtaagattctctggttggttttctttagctcttcacgatcctcctccgta 4233508  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 361
Target Start/End: Complemental strand, 36840822 - 36840717
Alignment:
Q  256 ggcggagccactcacatcagtgtgggggctcctgcctgcacta-ttattttcaatccaatatatataccagccactttggggtgctttatttttaaggga 354  Q
    |||||| |||||||||| | ||||||||||| ||||||||||| ||||||| || ||||| ||||||| || || ||| ||||||| |||||| |||| |    
T  36840822 ggcggaaccactcacattattgtgggggctcgtgcctgcactagttattttaaaaccaatgtatatactagtca-ttttgggtgctatattttcaaggaa 36840724  T
Q  355 actttgg 361  Q
    |||||||    
T  36840723 actttgg 36840717  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 49603360 - 49603320
Alignment:
Q  256 ggcggagccactcacatcagtgtgggggctcctgcctgcac 296  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  49603360 ggcggagccactcacatgattgcgggggctcctgcctgcac 49603320  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 12587811 - 12587767
Alignment:
Q  252 caggggcggagccactcacatcagtgtgggggctcctgcctgcac 296  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  12587811 caggggcggagccactcacatgattgtgggggctcctgcctgcac 12587767  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 34054155 - 34054204
Alignment:
Q  256 ggcggagccactcacatcagtgtgggggctcctgcctgcactattatttt 305  Q
    ||||||||||||||||  ||||||||||||||| ||||||| ||| ||||    
T  34054155 ggcggagccactcacaagagtgtgggggctcctacctgcacaattctttt 34054204  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 27324911 - 27324875
Alignment:
Q  252 caggggcggagccactcacatcagtgtgggggctcct 288  Q
    ||||||||||||||||||||| | |||||||||||||    
T  27324911 caggggcggagccactcacatgattgtgggggctcct 27324875  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 29283732 - 29283688
Alignment:
Q  261 agccactcacatcagtgtgggggctcctgcctgcactattatttt 305  Q
    |||||||||||  ||||||||||||||||||||||| ||| ||||    
T  29283732 agccactcacaagagtgtgggggctcctgcctgcacaattctttt 29283688  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 6900343 - 6900387
Alignment:
Q  252 caggggcggagccactcacatcagtgtgggggctcctgcctgcac 296  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  6900343 caggggcggagccactcacatgattgtgggggctcctgcctgcac 6900387  T

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