View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14765_low_4 (Length: 374)

Name: NF14765_low_4
Description: NF14765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14765_low_4
NF14765_low_4
[»] chr3 (6 HSPs)
chr3 (54-284)||(29822548-29822778)
chr3 (54-151)||(29821408-29821505)
chr3 (181-284)||(9777075-9777179)
chr3 (54-284)||(33149575-33149815)
chr3 (181-257)||(9769325-9769401)
chr3 (181-257)||(382175-382250)
[»] chr6 (6 HSPs)
chr6 (54-284)||(24546859-24547089)
chr6 (54-284)||(28930903-28931137)
chr6 (54-179)||(4030761-4030886)
chr6 (70-249)||(9754148-9754327)
chr6 (54-151)||(4030240-4030337)
chr6 (74-151)||(28928468-28928545)
[»] chr4 (3 HSPs)
chr4 (74-201)||(53757858-53757986)
chr4 (72-257)||(47606423-47606605)
chr4 (54-151)||(53757468-53757565)
[»] scaffold0012 (2 HSPs)
scaffold0012 (72-257)||(243411-243593)
scaffold0012 (207-284)||(242687-242768)
[»] chr5 (1 HSPs)
chr5 (81-151)||(11431391-11431461)
[»] chr1 (2 HSPs)
chr1 (207-284)||(6709912-6709993)
chr1 (209-257)||(6710648-6710696)
[»] chr7 (1 HSPs)
chr7 (96-151)||(7146913-7146969)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 54 - 284
Target Start/End: Complemental strand, 29822778 - 29822548
Alignment:
Q  54 ttaaacaaattagttctctccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaagga 153  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |    
T  29822778 ttaatcaaattagtcctctccgttaacttttttgttaaaaccgttaactcttgccacatgtcacttaagattgattatgaatggttggatttaaaaagca 29822679  T
Q  154 ctcacaaatatacgatgaactcaatgtatatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcat 253  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29822678 ctcacaaatatacaatagactcaatgtatatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcat 29822579  T
Q  254 cttcctctttatcttccaacttcattcccat 284  Q
    ||||||||||||||||||||||||| |||||    
T  29822578 cttcctctttatcttccaacttcatccccat 29822548  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 29821408 - 29821505
Alignment:
Q  54 ttaaacaaattagttctctccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaag 151  Q
    |||| ||| ||||| ||||||||||| |||||||||| |||||||||||||||  || ||||||||||||||||| || ||||||| |||||||||||    
T  29821408 ttaatcaagttagtcctctccgttaagttttttgttaaaaccgttaactcttgctacgtgtcacttaagattgataatcaatgattagatttaaaaag 29821505  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 9777075 - 9777179
Alignment:
Q  181 atatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatcttc-ctctttatcttccaacttcatt 279  Q
    ||||||||||||||||||| |||   | |||||||| |||||| |||||||||||||||| || |||||||||| || ||| || ||||||||||||||     
T  9777075 atatgataatttatattatctttctctgtttgtcttaaatttcctaaaattaaaaatcaccaacaatcttcatcatctctccttttcttccaacttcatc 9777174  T
Q  280 cccat 284  Q
    |||||    
T  9777175 cccat 9777179  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 284
Target Start/End: Original strand, 33149575 - 33149815
Alignment:
Q  54 ttaaacaaattagttctctccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaagga 153  Q
    |||| ||| ||||| ||||||||||  |||||||||| |||||||||| |||| ||| ||||||||||||||  | || || | || |||||||||||      
T  33149575 ttaatcaagttagtcctctccgttagtttttttgttaaaaccgttaacccttgccacgtgtcacttaagatttgtgatcaagggttagatttaaaaagcg 33149674  T
Q  154 ctcacaaatatacgatgaactcaatgtatatgataatttatattatatttacttatttgtctttaatttctta-------aaattaaaaatcacaaataa 246  Q
    | |||| |||||  ||| |||      ||||||||||||| ||||| ||| |||||||||||| |||||| ||       ||||||||||| || |||||    
T  33149675 cacacacatatataatggactagcaacatatgataattta-attatctttccttatttgtcttaaatttcctaaaactacaaattaaaaattaccaataa 33149773  T
Q  247 tcttcatctt----cctctttatcttccaacttcattcccat 284  Q
    ||||||||||    |||||| ||||||||||||||| |||||    
T  33149774 tcttcatcttcttccctcttcatcttccaacttcatccccat 33149815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 9769401 - 9769325
Alignment:
Q  181 atatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatcttc 257  Q
    ||||||||||||||||||| |||  |||||| |||| |||||||||||||||||||| || || || ||||||||||    
T  9769401 atatgataatttatattatctttctttatttatcttgaatttcttaaaattaaaaattaccaacaaacttcatcttc 9769325  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 382175 - 382250
Alignment:
Q  181 atatgataatttatattat-atttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatcttc 257  Q
    |||||||||||| |||||| |||| |||  ||||||| ||||||||||||||||||||||  || |||||||||||||    
T  382175 atatgataatttttattatcatttcctt--ttgtcttgaatttcttaaaattaaaaatcatcaacaatcttcatcttc 382250  T

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Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 54 - 284
Target Start/End: Complemental strand, 24547089 - 24546859
Alignment:
Q  54 ttaaacaaattagttctctccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaagga 153  Q
    |||| ||||||||| |||||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||| || |||| |||||||||| ||| |    
T  24547089 ttaatcaaattagtcctctccgttaacttttttgtcaaaaccgttaactgttgccacatgtcacttaagattgataatcaatggttggatttaataagca 24546990  T
Q  154 ctcacaaatatacgatgaactcaatgtatatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcat 253  Q
    ||||||||||||| ||| ||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||     
T  24546989 ctcacaaatatacaatggactcaatatatatgataatttctattatatttccttatttttctttaatttcttaaaattaaaaatcacaaataatcttcac 24546890  T
Q  254 cttcctctttatcttccaacttcattcccat 284  Q
    ||||||||| ||||||||||||||| |||||    
T  24546889 cttcctcttcatcttccaacttcatccccat 24546859  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 54 - 284
Target Start/End: Complemental strand, 28931137 - 28930903
Alignment:
Q  54 ttaaacaaattagttctctccgttaactttttt-gttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaagg 152  Q
    |||| ||| ||||| |||||||||| ||||||| |||| |||||  |||||||| ||||||||||||||||||||| || || | ||||||||||||||     
T  28931137 ttaatcaacttagtcctctccgttagctttttttgttaaaaccgccaactcttgccacatgtcacttaagattgatgatcaagggttggatttaaaaagc 28931038  T
Q  153 actcacaaatatacgatgaactcaatgtatatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttca 252  Q
    |||||||||||||| ||||||| |  |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||    
T  28931037 actcacaaatatacaatgaacttacagtatatgataatttatattatatttcattatttgtctttaatttcttaaaattaaaaatcacaaaaaatcttca 28930938  T
Q  253 ---tcttcctctttatcttccaacttcattcccat 284  Q
       |||||||||| ||||| |||||||||||||||    
T  28930937 tattcttcctcttcatctttcaacttcattcccat 28930903  T

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Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 4030886 - 4030761
Alignment:
Q  54 ttaaacaaattagttctctccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaagga 153  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| |    
T  4030886 ttaatcaaattagtcctctccgttaacttttttgttaaaaccgttaactcttaccacatgtcacttaagattgattatgaatggttggatttaaaaagca 4030787  T
Q  154 ctcacaaatatacgatgaactcaatg 179  Q
    ||||||||||||| ||| ||||||||    
T  4030786 ctcacaaatatacaatggactcaatg 4030761  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 249
Target Start/End: Complemental strand, 9754327 - 9754148
Alignment:
Q  70 tctccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaaggactcacaaatatacgat 169  Q
    |||||||||| ||||||| || ||| ||||||  ||| ||||||||||||| ||||| | || || | ||| ||||  ||||  | ||| | ||||| ||    
T  9754327 tctccgttaatttttttgctaaaactgttaacctttgccacatgtcacttaggattggtgatcaagggttgaatttgtaaagctcacacgagtatacaat 9754228  T
Q  170 gaactcaatgtatatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatct 249  Q
      | |||  ||||||||||||||||||||| |||  ||||||||||  |||||| |||||||||||||||| ||||||||    
T  9754227 agattcacagtatatgataatttatattatctttttttatttgtctcgaatttcctaaaattaaaaatcaccaataatct 9754148  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 4030240 - 4030337
Alignment:
Q  54 ttaaacaaattagttctctccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaag 151  Q
    |||| ||| ||||| |||||| |||| |||||||||| ||| ||||||||||| ||| |||||||||| |||||| || ||||  |||||||||||||    
T  4030240 ttaatcaagttagtcctctccattaagttttttgttaaaactgttaactcttgccacgtgtcacttaaaattgataatcaatggatggatttaaaaag 4030337  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 28928468 - 28928545
Alignment:
Q  74 cgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaag 151  Q
    ||||| ||||||||||| ||||||||| ||||| ||||| ||||||||||||||| || || | |||||| |||||||    
T  28928468 cgttagcttttttgttaaaaccgttaagtcttgccacatatcacttaagattgataatcaagggttggatctaaaaag 28928545  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 53757986 - 53757858
Alignment:
Q  74 cgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatga-ttggatttaaaaaggactcacaaatatacgatgaa 172  Q
    ||||| |||||| |||| ||||||||||||||| ||| ||||| ||||||||||| || || |  |||||||||||||| ||||| |||||||| | | |    
T  53757986 cgttagctttttcgttaaaaccgttaactcttggcacgtgtcatttaagattgatgatcaaagggttggatttaaaaagtactcataaatatacaacgga 53757887  T
Q  173 ctcaatgtatatgataatttatattatat 201  Q
    ||||  |||||||||||||||||||||||    
T  53757886 ctcatagtatatgataatttatattatat 53757858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 47606605 - 47606423
Alignment:
Q  72 tccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaaggactcacaaatatacgatga 171  Q
    |||||||  ||||||| || ||||||||| ||||| ||| ||||||||| ||||| | || || | |||||||||||||| || || |||| ||| || |    
T  47606605 tccgttagtttttttgctaaaaccgttaaatcttgccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacaca-aaatttacaataa 47606507  T
Q  172 actcaatgtatatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatcttc 257  Q
    |||||    ||||||| |||||||  || ||| |   |||||||| |||||| |||||||||||||||| || |||||||||||||    
T  47606506 actcacaacatatgatcatttata--atctttccccgtttgtcttgaatttcctaaaattaaaaatcaccaacaatcttcatcttc 47606423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 53757468 - 53757565
Alignment:
Q  54 ttaaacaaattagttctctccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaag 151  Q
    |||| ||| ||||| ||||| |||| ||||||| ||| | ||||||| ||||| |||| |||| ||||||||||| || || | |||||| |||||||    
T  53757468 ttaatcaagttagtcctctctgttagcttttttattaaatccgttaagtcttgccacaagtcatttaagattgataatcaaaggttggatctaaaaag 53757565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 243593 - 243411
Alignment:
Q  72 tccgttaacttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaaggactcacaaatatacgatga 171  Q
    |||||||  ||||||| || || |||||| ||||| ||| ||||||||| ||||  | || || |||||||||||||||| || || |||| ||||||      
T  243593 tccgttagtttttttgctaaaatcgttaagtcttgccacgtgtcacttaggattagtgatcaaggattggatttaaaaagcacaca-aaatttacgatag 243495  T
Q  172 actcaatgtatatgataatttatattatatttacttatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatcttc 257  Q
    |||||    ||||||| |||||||  || ||| | | |||||||| |||||| ||||||||||||| || || |||||||||||||    
T  243494 actcacaacatatgatcatttata--atctttccctgtttgtcttgaatttcctaaaattaaaaattaccaacaatcttcatcttc 243411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 242687 - 242768
Alignment:
Q  207 tatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatctt----cctctttatcttccaacttcattcccat 284  Q
    |||||||||| |||||  |||||||||||||||| || ||||||||||||    |||||| |||| |||||||||| |||||    
T  242687 tatttgtcttgaattttctaaaattaaaaatcaccaacaatcttcatctttttccctcttcatctcccaacttcatccccat 242768  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 11431461 - 11431391
Alignment:
Q  81 ttttttgttacaaccgttaactcttgtcacatgtcacttaagattgattatgaatgattggatttaaaaag 151  Q
    |||||||||| ||| ||||| ||||| ||||||||||||| ||||| | || |||| ||||||||||||||    
T  11431461 ttttttgttaaaactgttaagtcttgccacatgtcacttaggattggtgattaatggttggatttaaaaag 11431391  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 6709912 - 6709993
Alignment:
Q  207 tatttgtctttaatttcttaaaattaaaaatcacaaataatcttcatctt----cctctttatcttccaacttcattcccat 284  Q
    |||||||||| |||||  |||||||||||||||| || ||||||||||||    |||||| |||| |||||||||| |||||    
T  6709912 tatttgtcttgaattttctaaaattaaaaatcaccaacaatcttcatcttcttccctcttcatctcccaacttcatccccat 6709993  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 6710696 - 6710648
Alignment:
Q  209 tttgtctttaatttcttaaaattaaaaatcacaaataatcttcatcttc 257  Q
    |||||||| |||||| ||||||||||||| || || |||||||||||||    
T  6710696 tttgtcttgaatttcctaaaattaaaaattaccaacaatcttcatcttc 6710648  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 7146913 - 7146969
Alignment:
Q  96 gttaactcttgtc-acatgtcacttaagattgattatgaatgattggatttaaaaag 151  Q
    |||||||||| || |||||||| ||||||||||| ||||| | ||||||||||||||    
T  7146913 gttaactcttttccacatgtcatttaagattgatgatgaacggttggatttaaaaag 7146969  T

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