View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14766_high_5 (Length: 467)
Name: NF14766_high_5
Description: NF14766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14766_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 452
Target Start/End: Original strand, 54843691 - 54844124
Alignment:
| Q |
15 |
gtagcatattgtatgcaactgggtcaacctgccaaattgtgattaaaacagaaatgtgatatgaatgaatgtaaaaacaattatcatctacnnnnnnnnn |
114 |
Q |
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| T |
54843691 |
gtagcatattgtatacaactgggtcaacctgccaaattgtgattaaaacagaaatgtgatataaatgaatgtaaaaacaattatcatctacaaaaaaaaa |
54843790 |
T |
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| Q |
115 |
-gggtccaagattagatgatagggcatacttcacggggaagaattcgcataatggtcagagtagtcatgtccagcacaactcgagttcctgcagtcagct |
213 |
Q |
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| T |
54843791 |
agggtccaagattagatgatagggcatacttcacggggaagaattcgcataatggtcagagtagtcatgtccagcacaactcgagttcctgcagtcagct |
54843890 |
T |
|
| Q |
214 |
tctctttgtccaccttactacgacagccaactacatatcttggcccgctgcttgctttaacgaccactaaaaagattcaaataatacacattgcttagat |
313 |
Q |
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| T |
54843891 |
tctctttgtccaccttactacgacagccaactacatatcttggcccgctgcttgctttaacgaccactaaaaagattcaaataatacacattgcttagat |
54843990 |
T |
|
| Q |
314 |
tatcatctttagccaatccaccagtttatgactaagagagggacagccttagcaatagagcttnnnnnnnnnnnnnnnntattgcataaataaaggttct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54843991 |
tatcatctttagccaatccaccagtttatgactaagagagggacagccttagcaatagagcttaaaaaaaaaaac-----attgcataaataaaggttct |
54844085 |
T |
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| Q |
414 |
gcttgtctgagcaagtgaaaattgggagtgtgaaaatgt |
452 |
Q |
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| T |
54844086 |
gcttgtctgagcaagtgaaaattgggagtgtgaaaatgt |
54844124 |
T |
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