View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14766_high_7 (Length: 392)
Name: NF14766_high_7
Description: NF14766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14766_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 1160106 - 1160490
Alignment:
| Q |
1 |
tgttgggacacaaacatgaaggtgtttgtgttcataattgtgcccgtgattggcgactgcaccaccaaccactccaccagcaactccaccagccactgca |
100 |
Q |
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| T |
1160106 |
tgttgggacacaaacatgaaggtgtttgtgtccataattgtgcccgtgattggcgactgcaccaccaaccactccaccagcaactccaccagccactgca |
1160205 |
T |
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| Q |
101 |
ccgccgataattcctgcagctgctccacctgaccttcctctaccaattcctcttcctcccattccacttccatggccacctgaacctccatg------tc |
194 |
Q |
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| T |
1160206 |
ccgccgataattcctgcagctgctccacctgaccttcctctaccaattcctcttcctcccattccacttccatggccacctgaacctccatgtcctcctc |
1160305 |
T |
|
| Q |
195 |
ctcctcctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttcctcaaacccatctctgtggttcaaccttgtagatgcctcaat |
294 |
Q |
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| T |
1160306 |
ctcctcctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttccacaaacccatctttgtggttcaaccttgtagatgcctcaat |
1160405 |
T |
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| Q |
295 |
atttccatttccatctaagttccctataatttgaataaaacaagttatcaaaccaaaagtgtgtgaaacaatattgaaatttgtg |
379 |
Q |
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| T |
1160406 |
atttccatttccatctaagttccctataatttgaataaaacaagttatcaaaccaaaagtgtgtgaaacaatattgaaatttgtg |
1160490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 1137266 - 1137379
Alignment:
| Q |
197 |
cctcctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttcctcaaacccatctctgtggttcaaccttgtagatgcctcaatat |
296 |
Q |
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| T |
1137266 |
cctcctccttttcttatggtaacagatagttcatgtttgtgttcatt---actttccatcatcgcaactctgtggttcaacctagtagagacttctatgt |
1137362 |
T |
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| Q |
297 |
ttccatttccatctaag |
313 |
Q |
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| T |
1137363 |
ttccatttccatctaag |
1137379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 1172323 - 1172387
Alignment:
| Q |
200 |
cctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttcctcaaacccatc |
264 |
Q |
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| T |
1172323 |
cctccctttcttatagtaagagatagttcatgtttgtgatcattccgactttccacgaacccatc |
1172387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 1141865 - 1141912
Alignment:
| Q |
196 |
tcctcctccctttcttatagtaacagatagttcatgtttgtgtgcatt |
243 |
Q |
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| T |
1141865 |
tcctcctccttttcttatggtaacagatagttcatgtttgtgttcatt |
1141912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 1164962 - 1165029
Alignment:
| Q |
197 |
cctcctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttcctcaaacccatc |
264 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |||| |||||||| | |||||||| |
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| T |
1164962 |
cctcctccctttcttatagtatgggatagttcatgtttgtgatcattccgactttccgcgaacccatc |
1165029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 1133696 - 1133733
Alignment:
| Q |
200 |
cctccctttcttatagtaacagatagttcatgtttgtg |
237 |
Q |
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| T |
1133696 |
cctccttttcttacagtaacagatagttcatgtttgtg |
1133733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 15612657 - 15612581
Alignment:
| Q |
201 |
ctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttcctcaaacccatctctgtggttcaac |
277 |
Q |
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||||||||||||||||| ||||||| ||||| ||| || |||||| ||||||||||| | ||||| ||| ||||||| |
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| T |
15612657 |
ctccctttcttatagtagcagatagatcatgattgcgttcattttaactttcctcaatcacatctttgttgttcaac |
15612581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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