View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14766_low_1 (Length: 595)
Name: NF14766_low_1
Description: NF14766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14766_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 41561269 - 41561846
Alignment:
| Q |
1 |
caaaaataattgtataaatatcatttctccgttaataatacatgttaataaatacaatgtattaacnnnnnnntgtattagagtaccgataaaaatttca |
100 |
Q |
| |
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||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
41561269 |
caaaaatgattgtataaatatcacttcttccttaataatacatgttaataaatacaatgtattaacaaaaaaatgtattagagtaccgataaaa-tttca |
41561367 |
T |
|
| Q |
101 |
agaaagttgaaagaactccaagattttagagaaaagaaagattgcccccacaatatcatacnnnnnnnaactttattcttcatattcttttctaacttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41561368 |
agaaagttgaaagaactccaagattttagagaaaagaaagattgcccccacaatatcatactttttttaactttattcttcatattcttttctaacttaa |
41561467 |
T |
|
| Q |
201 |
attgaaccaactaaaacttcacnnnnnnncatcatctcatccttaacattagtttattttccaatggcttcccaaactaaccagcaacactttcttctca |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41561468 |
attgaaccaactaaaacttcactttttttcatcatctcatccttaacattagtttattttccaatggcttcccaaactaaccagcaacactttcttctca |
41561567 |
T |
|
| Q |
301 |
ttccattaatgtctcaaagccatctcattcctttcacagaaatggccaaattgtttgcatcaaatggtgtcacagttaccattgttctcacaccccttaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41561568 |
ttccattaatgtctcaaagccatctcattcctttcacagaaatggccaaattgtttgcatcaaatggtgtcacagttaccattgttctcacaccccttaa |
41561667 |
T |
|
| Q |
401 |
tgctgcaaggttcaacatggtcattgatcaagcaaaatcatcaaaccttaaaatccaatttcaattactaccttttccttgtgtagaagcaggtttacca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41561668 |
tgctgcaaggttcaacatggtcattgatcaagcaaaatcatcaaaccttaaaatccaatttcaattactaccttttccttgtgtagaagcaggtttacca |
41561767 |
T |
|
| Q |
501 |
aaagggtgtgaaaatatggacacacttccttctcctaaatatcaacctttgttttttgcagcttgcaatatgcttaaag |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41561768 |
aaagggtgtgaaaatatggacacacttccttctcctaaatatcaacctttgttttttgcagcttgcaatatgcttaaag |
41561846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 195 - 431
Target Start/End: Original strand, 46656191 - 46656431
Alignment:
| Q |
195 |
acttaaattgaaccaactaaaacttcacnnnnnnncatcatctcatccttaacattagtttattttccaatggctt-cccaaactaaccagcaacacttt |
293 |
Q |
| |
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||||||||||| | |||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||| ||||||||||||| || |||| |
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| T |
46656191 |
acttaaattgagctaactaaaacttcactttttttcatcatctcacccttaacatcagtttattttcccatggctttcccaaactaaccaacag-acttc |
46656289 |
T |
|
| Q |
294 |
cttctcattccattaatgtctcaaagccatctcattcctttcacagaa---atggccaaattgtttgcatcaaatggtgtcacagttaccattgttctca |
390 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46656290 |
cttctcattccatttatgtctcaaagccatctcattcctttcacataataaatggccaaattgtttgcatcaaatggtgtcactgttaccattgttctca |
46656389 |
T |
|
| Q |
391 |
-caccccttaatgctgcaaggttcaacatggtcattgatcaa |
431 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46656390 |
cccccccttaatgctgcaaggttcaacatggtcattgatcaa |
46656431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 513 - 579
Target Start/End: Original strand, 46656430 - 46656496
Alignment:
| Q |
513 |
aatatggacacacttccttctcctaaatatcaacctttgttttttgcagcttgcaatatgcttaaag |
579 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
46656430 |
aatatggacacacttcctactcctaaataccaacctttattttttgcagcttgcaatatgcttaaag |
46656496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 27473132 - 27473104
Alignment:
| Q |
1 |
caaaaataattgtataaatatcatttctc |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
27473132 |
caaaaataattgtataaatatcatttctc |
27473104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25239278 - 25239320
Alignment:
| Q |
1 |
caaaaataattgtataaatatcatttctccgttaataatacat |
43 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
25239278 |
caaaaataattgtacaaatatcatttctcaattaataatacat |
25239320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 26686908 - 26686880
Alignment:
| Q |
2 |
aaaaataattgtataaatatcatttctcc |
30 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26686908 |
aaaaataattgtataaatatcatttctcc |
26686880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 26956639 - 26956611
Alignment:
| Q |
2 |
aaaaataattgtataaatatcatttctcc |
30 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26956639 |
aaaaataattgtataaatatcatttctcc |
26956611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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