View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14766_low_13 (Length: 241)
Name: NF14766_low_13
Description: NF14766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14766_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 51703949 - 51704111
Alignment:
| Q |
75 |
caatcatctcttaattcacatgtgtgagctattccggcggtgacatgattgaag-------------agagagacaataccaacatagattaggaagcgt |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
51703949 |
caatcatctcttaattcacatgtgtgagctattccggcggtggcatgattgaagatgacgggcgaagagagagacaataccaacatagattaggaagggt |
51704048 |
T |
|
| Q |
162 |
cgaatgccatttccattaatgagactcgaatcagccaagccgtgttgggctttgattttgagaa |
225 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
51704049 |
cgaatgccatttccattaatgagacccgaatcagccaaaccgtg-tgggctttgattttgagaa |
51704111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 51703803 - 51703882
Alignment:
| Q |
1 |
cacatgaacaaatatcccaagcaacaatgaaaatactcccagggtcaaacttgctatatagaaccaaaagttgccaatca |
80 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51703803 |
cacatgaacaaatatcccaagcaacaatggaaatactcccagggtcaaacttgctacatagaaccaaaagttgccaatca |
51703882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University