View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14766_low_14 (Length: 240)
Name: NF14766_low_14
Description: NF14766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14766_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 38627398 - 38627194
Alignment:
| Q |
17 |
cataggttatctttatgaacttttttgaatacatacacatgtacttatatcgtgggacacatctcctgaaaatcctaattccaccaatcatttcataact |
116 |
Q |
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| T |
38627398 |
cataggttatctttatgaacttttttgaatacatacacatgtacttatatcgtgggacacatctcctgaaaatcctaattccaccaatcatttcataact |
38627299 |
T |
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| Q |
117 |
gtggttttaagctttgtatatgcttttcattcttgcatcatggagtcattggtccaaacaggtacaccaatcatctacagatgcagcgtcatccctccta |
216 |
Q |
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| T |
38627298 |
gtggttttaagctttgtatatgcttttcattcttgcatcatggagtcattggtccaaacaggtacaccaatcatctacagatgcagcgtcatccctccta |
38627199 |
T |
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| Q |
217 |
gtaac |
221 |
Q |
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||||| |
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| T |
38627198 |
gtaac |
38627194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 31169693 - 31169743
Alignment:
| Q |
171 |
caaacaggtacaccaatcatctacagatgcagcgtcatccctcctagtaac |
221 |
Q |
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||||||||||||||||||||| |||||||| || ||||| ||||||||||| |
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| T |
31169693 |
caaacaggtacaccaatcatcaacagatgcggcctcatcgctcctagtaac |
31169743 |
T |
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