View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14766_low_2 (Length: 540)
Name: NF14766_low_2
Description: NF14766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14766_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 7 - 523
Target Start/End: Original strand, 42655109 - 42655625
Alignment:
| Q |
7 |
gagtgagatgaaccaaatactcatcatcaggcaaaccacaatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaa |
106 |
Q |
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| T |
42655109 |
gagtgaaaagaaccaaatactcatcatcaggcaaaccacaatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaa |
42655208 |
T |
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| Q |
107 |
ggaggattttttgttgagaatatcaagtagtcttgatggctctaactgtgttctatccatctcaggaaggttgcttccaaaagaaggcgatcttggtgac |
206 |
Q |
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| T |
42655209 |
ggaggattttttgttgagaatatcaagtagtcttgatggctctaactgtgttctatccatctcaggaaggttgcttccaaaagaaggcgatcttggtgac |
42655308 |
T |
|
| Q |
207 |
tttcttctatcatctgacattggtaattccgaaggctcctcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttgcat |
306 |
Q |
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| T |
42655309 |
tttcttctatcatctgacattggtaattccgaaggctcctcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttgcat |
42655408 |
T |
|
| Q |
307 |
attcaggatactttgctaggacatattcttctacatattccatttctttctgtgtgattggacctgaccatcttaggtcaatgtcgcggatagttgatat |
406 |
Q |
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| T |
42655409 |
attcaggatactttgctaggacatattcctctacatattccatttctttctgtgtgattggacctgaccatcttaggtcaatgtcgcggatagttgatat |
42655508 |
T |
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| Q |
407 |
tgcttcagctatgatatgagcaggaatcaccacatttggcttctgtttaggtagcaattataagtttattgttagtttcaaaacggaacgtgtaagtgta |
506 |
Q |
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| T |
42655509 |
tgcttcagctatgatatgagcaggaatcaccacatttggcttctgtttaggtagcaattataagtttattgttagtttcaaaacggaacgtgtaagtgta |
42655608 |
T |
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| Q |
507 |
acattacgtgcatgttt |
523 |
Q |
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| T |
42655609 |
acattacgtgcatgttt |
42655625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 16 - 489
Target Start/End: Complemental strand, 43052866 - 43052390
Alignment:
| Q |
16 |
gaaccaaatactcatcatcaggcaaaccacaatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaaggaggattt |
115 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
43052866 |
gaaccaaatactcagcatcaggcaaaccacaatgcttcaaaaccttattctgagcttgaatttccgggatcgagatgaatcttccaggaaaggatgattt |
43052767 |
T |
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| Q |
116 |
tttgttgagaatatcaagtagtcttgatggctctaactgtgttctatccatctcaggaaggttgcttccaaaag---aaggcgatcttggtgactttctt |
212 |
Q |
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| T |
43052766 |
tttattgagaatatcaagtagtcttgatggctctagctgtgtcatatccatttcaggagggtcgcttccaaaattataagatggtcttaatgactttcta |
43052667 |
T |
|
| Q |
213 |
ctatcatctgacattggtaattccgaaggctcctcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttgcatattcag |
312 |
Q |
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| T |
43052666 |
ctatcatctgacagtggtaattttaaaggctccccattgatcataaaactggacatatctgtaccacttccatcgccttcaatgagatttgcatattctg |
43052567 |
T |
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| Q |
313 |
gatactttgctaggacatattcttctacatattccatttctttctgtgtgattggacctgaccatcttaggtcaatgtcgcggatagttgatattgcttc |
412 |
Q |
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| T |
43052566 |
gatactttgctaggacatattgttttacacattccatttctttcggtgtaattggacctgaccatctaaggccaataccgcggattgttgatattgcttc |
43052467 |
T |
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| Q |
413 |
agctatgatatgagcaggaatcaccacatttggcttctgtttaggtagcaattataagtttattgttagtttcaaaa |
489 |
Q |
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| T |
43052466 |
agctatgatatgagcaggaatctccacatgtgctttctgcttatgtaccaattacaagtcttttgttagtttcaaaa |
43052390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 246 - 435
Target Start/End: Original strand, 45479581 - 45479770
Alignment:
| Q |
246 |
tcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttgcatattcaggatactttgctaggacatattcttctacatatt |
345 |
Q |
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|||||||||||||| | ||||||||||| ||| |||||||||||||||| | ||| |||||| |||||||||||||| ||||| | ||| ||||||| |
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| T |
45479581 |
tcattgatgataaaggtagacatgtctatcccatttccatctccttcaatcaaccttgaatattctggatactttgctagaacatactgttcaacatatt |
45479680 |
T |
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| Q |
346 |
ccatttctttctgtgtgattggacctgaccatcttaggtcaatgtcgcggatagttgatattgcttcagctatgatatgagcaggaatca |
435 |
Q |
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|||||||||| |||||||||||||||||||||| | || | ||||||||||||||||| |||||||||||||| ||||| ||||||| |
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| T |
45479681 |
ccatttcttttggtgtgattggacctgaccatctaatatcgaattcgcggatagttgatatcgcttcagctatgatgtgagctggaatca |
45479770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 45479363 - 45479467
Alignment:
| Q |
46 |
aatgtttcaaaaccttattttgagcttgaatttccggtatcgagatgaaacttccaggaaaggaggattttttgttgagaatatcaagtagtcttgatgg |
145 |
Q |
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|||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| | ||| |||||||| ||||||||||||||||||| |||||| | |
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| T |
45479363 |
aatgcttcaaaaccttattttgagcttgaatttcggggatcgatatgaaacttccggtaaatgaggatttcttgttgagaatatcaagtaaccttgattg |
45479462 |
T |
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| Q |
146 |
ctcta |
150 |
Q |
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||||| |
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| T |
45479463 |
ctcta |
45479467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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