View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14766_low_4 (Length: 500)
Name: NF14766_low_4
Description: NF14766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14766_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 234418 - 233984
Alignment:
| Q |
1 |
acttgacttgaagtaccattattgctgaactgtggattatagctttgttagaggcacaacataacctctcattacactggtgtggttctgaattccaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
234418 |
acttgacttgaagtaccattattgctgaactgtggattatagctttgttagaggcacaacataacctctcattacactggtgtggttctgaattccaaca |
234319 |
T |
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| Q |
101 |
attttttgcctgatattttaatttttaaatattccagaggtgcgttcttgatattgggtaatgcccaggctgagattgagcaaggaaagtcttcgaatat |
200 |
Q |
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| T |
234318 |
attttttgcctgatattttaatttttaaatattccagaggtgcgttcttgatattgggtaatgcccaggctgagattgagcaaggaaagtcttcgaatat |
234219 |
T |
|
| Q |
201 |
atttgatttcatgtttaggctgagactgtgctgcaaaatttaatcacaagtcttcgaagtcctgtgcagcttactgcacaggggcgcaccctaagttgat |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
234218 |
atctgatttcatgtttaggctgagactgtgctgcaaaatttaatcacaagtcttcgaagtcctgtgcggcttactgcacaggggcgcaccctaagttgat |
234119 |
T |
|
| Q |
301 |
ccccatcgttgaagcccttgataatggttttctcaaatgacgtcgcatttcacatagacggttatcaatctccttgcctatataatcgtgacccatgctt |
400 |
Q |
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| T |
234118 |
ccccatcgttgaagcccttgataatggttttctcaaatgacgtcgcatttcacatagacggttatcaatctccttgcctatataatcgtgacccatgctt |
234019 |
T |
|
| Q |
401 |
gagcgttggagtgttaacattcacttcctctatag |
435 |
Q |
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| T |
234018 |
gagcgttggagtgttaacattcacttcctctatag |
233984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 36419170 - 36419325
Alignment:
| Q |
1 |
acttgacttgaagtaccattattgctgaactgtggattatagctttgttagaggcacaacataacctctcattacactggtgtggttctgaattccaaca |
100 |
Q |
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||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| || ||||| |||||||||||||| |
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| T |
36419170 |
acttgacttgaagggcaattattgctgaactggggattttagctttgttagaggcacagaataacctctcattacgttgttgtggatctgaattccaaca |
36419269 |
T |
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| Q |
101 |
attttttgcctgatattttaatttttaaatattccagaggtgcgttcttgatattg |
156 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36419270 |
atttcttacctgatattttaatttttaaatattccagaggtgcattcttgatattg |
36419325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 36419546 - 36419600
Alignment:
| Q |
158 |
gtaatgcccaggctgagattgagcaaggaaagtcttcgaatatatttgatttcat |
212 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36419546 |
gtaatgctcaggctgagattgagcaaggaaagtcttcgaatatatttgatttcat |
36419600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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