View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14766_low_6 (Length: 464)
Name: NF14766_low_6
Description: NF14766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14766_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 120 - 451
Target Start/End: Original strand, 39583495 - 39583802
Alignment:
| Q |
120 |
tagcagaaaagaagtaaaacacgccgcagttgtttccttttctattgatcaggaacttggtttgtccttcaagtactttcagtttcggtgtcactatcag |
219 |
Q |
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| T |
39583495 |
tagcagaaaagaagtaaaacacgccgcagttgtttccttttctattgatcaggaacttggtttgtccttcaagtactttcagtttcggtatcactatcag |
39583594 |
T |
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| Q |
220 |
tatccgtatcactatctgtgtctgtgtcttcactttacctgtcactttcttccaaatatttcaggtaatagatacatatcaatgcagccgcagccgcagc |
319 |
Q |
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| T |
39583595 |
tatccgtatcactatctgtgtctgtgtcttcactttcactgtcactttcttccaaatatttcaggtaatagatacatatcaat------------gcagc |
39583682 |
T |
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| Q |
320 |
cgcagccataatcatctgcatatgcatacaatggagcattcgccttcgcttccgccttcgctcttcttcattgccatcatttccaccacgttttttattc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39583683 |
cgcagccataatcatctgcatatgcatacaatggagcatt------------cgccttcgctcttcttcattgccatcatttccaccacgttttttattc |
39583770 |
T |
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| Q |
420 |
gaactaaacacgctatttgtcatacttgaaag |
451 |
Q |
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| T |
39583771 |
gaactaaacacgctatttgtcatacttgaaag |
39583802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 271
Target Start/End: Complemental strand, 39627425 - 39627296
Alignment:
| Q |
145 |
gcagttgtttccttttctattgatcag---gaacttggtttgtccttcaagtactttcagtttcggtgtcactatcagtatccgtatcactatctgtgtc |
241 |
Q |
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| T |
39627425 |
gcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcagtgtc |
39627326 |
T |
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| Q |
242 |
tgtgtcttcactttacctgtcactttcttc |
271 |
Q |
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| T |
39627325 |
cgtgtcttcactttcactatcactttcttc |
39627296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 39616697 - 39616604
Alignment:
| Q |
145 |
gcagttgtttccttttctattgatca---ggaacttggtttgtccttcaagtactttcagtttcggtgtcactatcagtatccgtatcactatc |
235 |
Q |
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| T |
39616697 |
gcagctgtttccttttctattgatcatcaggaacttcatttgtccttccagtactttcagtttccgtatcaatatcagtatctgtatcactatc |
39616604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 452
Target Start/End: Complemental strand, 39627218 - 39627124
Alignment:
| Q |
361 |
gccttcgcttccgccttcgctcttcttcattgccatcat---ttccaccacgttttttattcgaactaaacacgctatttgtcatacttgaaagt |
452 |
Q |
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| T |
39627218 |
gcctttgcttctgctttcgctcttcttcatcatcatcatcatttctaccacgtttattatttgaactaaacaagctagttgtcatacttgaaagt |
39627124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 39583394 - 39583427
Alignment:
| Q |
19 |
cagaaatgcttatattgagacttcagaagttcat |
52 |
Q |
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| T |
39583394 |
cagaaatgcttatactgagacttcagaagttcat |
39583427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 434
Target Start/End: Complemental strand, 47532851 - 47532663
Alignment:
| Q |
228 |
tcactatctgtgtctgtgtcttcactttacctgtcactttcttccaaatatttcaggtaatagatacatatcaatgcagccgcagccgcagccgcagcca |
327 |
Q |
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| T |
47532851 |
tcactatcagtatctgtggcttcactttcactgtcactttcttccaaaaggtacaggtcatagatgcatatcaa------ggcagctgcagctgcagcca |
47532758 |
T |
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| Q |
328 |
taatcatctgcatatgcatacaatggagcattcgccttcgcttccgccttcgctcttcttcattgccatcatttccaccacgttttttattcgaactaaa |
427 |
Q |
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|||| ||||| |||||| ||||||||||||| |||||||||||||| ||||||| | ||||||||| ||| ||||||||||| || ||||| |
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| T |
47532757 |
taat------catattcataca---gagcattcgcctttgcttccgccttcgc---tcttcatcgtcatcatttctacctcgttttttatttgagctaaa |
47532670 |
T |
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