View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14766_low_9 (Length: 349)
Name: NF14766_low_9
Description: NF14766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14766_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 55233343 - 55233025
Alignment:
| Q |
19 |
gttatgcctctttttaatccatgtaattaatttaattgtttttatttaaatgttaccagcttattgcactggtctccttttggctcgccgtgttcttcaa |
118 |
Q |
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| T |
55233343 |
gttatgcctctttttaatccatgtaattaatttaattgtttttatttaaatgttaccagcttattgcactggtctccttctggctcgccgtgttcttaaa |
55233244 |
T |
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| Q |
119 |
actcttgaaatggatgacgagtatgaaggcaatgttgtggtatacatcaacattctacactttttatctacctcactattcatttcatcacctctgtatg |
218 |
Q |
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| T |
55233243 |
actcttgaaatggatgacgagtatgaaggcaatgttgtggtatacatcaacattctacactttttatctacctcactattcatttcctcacctctgtatg |
55233144 |
T |
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| Q |
219 |
tcttatatttactcaggcaaccggagaggattattcagtggaaccagctgactccaggaggccattccgtgctctcctcgatgttggtctagttaagacc |
318 |
Q |
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| T |
55233143 |
tcttatatttactcaggcaaccggagaggattattcagtggaaccagctgactccaggaggccattccgtgctctcctcgacgttggtctcgttaagacc |
55233044 |
T |
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| Q |
319 |
acaaccggaaaccgcgtct |
337 |
Q |
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| T |
55233043 |
acaaccggaaaccgcgtct |
55233025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 10464431 - 10464326
Alignment:
| Q |
232 |
caggcaaccggagaggattattcagtggaaccagctgactccaggaggccattccgtgctctcctcgatgttggtctagttaagaccacaaccggaaacc |
331 |
Q |
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| T |
10464431 |
caggctactggagaggattattcagttgagccagctgagtctaggaggccgttccgtgctctccttgatgttggtcttgttaagaccaccactggaaacc |
10464332 |
T |
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| Q |
332 |
gcgtct |
337 |
Q |
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| |||| |
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| T |
10464331 |
gtgtct |
10464326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 10464593 - 10464505
Alignment:
| Q |
73 |
accagcttattgcactggtctccttttggctcgccgtgttcttcaaactcttgaaatggatgacgagtatgaaggcaatgttgtggtat |
161 |
Q |
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| T |
10464593 |
accagcttattgcactggactcctcttggcccgtcgtgttctgaagacacttgagatggatgaggagtatgagggcaatgttgaggtat |
10464505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 5112996 - 5113068
Alignment:
| Q |
241 |
ggagaggattattcagtggaaccagctgactccaggaggccattccgtgctctcctcgatgttggtctagtta |
313 |
Q |
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| T |
5112996 |
ggagaggattattcagtggagccttctgactccaggaggccattccatcctctagtcaatgttggtctcgtta |
5113068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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