View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14767_low_1 (Length: 604)

Name: NF14767_low_1
Description: NF14767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14767_low_1
NF14767_low_1
[»] chr4 (6 HSPs)
chr4 (19-181)||(47211310-47211472)
chr4 (462-587)||(47210242-47210367)
chr4 (178-281)||(47210533-47210636)
chr4 (494-551)||(42193479-42193536)
chr4 (323-372)||(47210457-47210506)
chr4 (481-553)||(31719709-31719781)
[»] chr6 (1 HSPs)
chr6 (466-587)||(8170574-8170695)
[»] chr3 (2 HSPs)
chr3 (472-587)||(20748552-20748667)
chr3 (465-551)||(19861943-19862029)
[»] chr1 (2 HSPs)
chr1 (88-167)||(1165136-1165215)
chr1 (97-161)||(50982261-50982325)
[»] chr5 (1 HSPs)
chr5 (97-167)||(22842176-22842246)
[»] chr8 (1 HSPs)
chr8 (88-160)||(45147419-45147491)
[»] chr2 (1 HSPs)
chr2 (88-160)||(1530936-1531008)
[»] chr7 (3 HSPs)
chr7 (478-552)||(15472550-15472624)
chr7 (478-552)||(15510170-15510244)
chr7 (469-545)||(41813951-41814027)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 47211472 - 47211310
Alignment:
Q  19 cattggagctccttccttttggtgtttaagcgagccacaccacttattttataaaacttagcaaagaccaattttgattcttgtgacataaacccatcca 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47211472 cattggagctccttccttttggtgtttaagcgagtcacaccacttatcttataaaacttagcaaagaccaattttgattcttgtgacataaacccatcca 47211373  T
Q  119 acagctaagaataaaactgtgaggaaaattacagcaccaaatccgtgtcaaaataaattatta 181  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||    
T  47211372 acagctgagaataaaattgtggggaaaattacagcaccaaatccgtgtccaaataaattatta 47211310  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 462 - 587
Target Start/End: Complemental strand, 47210367 - 47210242
Alignment:
Q  462 tagcaaaaggcaatctcttggattccaacactactcatagaagagacaagatggaatcttcaatctatgcaagctccattgccaagacaaaatcttgatc 561  Q
    |||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47210367 tagcaaaaggcaatctcttggatttcaacactactcgtagaaaatacaagatggaatcttcaatctatgcaagctccattgccaagacaaaatcttgatt 47210268  T
Q  562 tcatccactatgtcatctaccccctt 587  Q
    |||||||| |||||||| ||||||||    
T  47210267 tcatccaccatgtcatccaccccctt 47210242  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 47210636 - 47210533
Alignment:
Q  178 attacatttaaaaactcatcacacattaaagcaaacagaaattatgcaatgtaaattatgtttgctctctgaatgcagtattagagttaaagtaaaaatc 277  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  47210636 attacatttcgaaactcatcacacattaaagcaaacagaaattatgcaatgtaaataatgtttgctctctaaatgcggtattagagttaaagtaaaaatc 47210537  T
Q  278 aaca 281  Q
    ||||    
T  47210536 aaca 47210533  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 494 - 551
Target Start/End: Complemental strand, 42193536 - 42193479
Alignment:
Q  494 actcatagaagagacaagatggaatcttcaatctatgcaagctccattgccaagacaa 551  Q
    |||||||||||||||| |||||||| ||||| || || ||||||||||||||||||||    
T  42193536 actcatagaagagacacgatggaattttcaacctttgtaagctccattgccaagacaa 42193479  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 47210506 - 47210457
Alignment:
Q  323 cacaagaaggatgacaaagctaaagaagaaaaactacaatgggtatcgta 372  Q
    ||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  47210506 cacaagaaggacgacaaagctaaagaagaaaaattacaatggatatcgta 47210457  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 31719781 - 31719709
Alignment:
Q  481 ggattccaacactactcatagaagagacaagatggaatcttcaatctatgcaagctccattgccaagacaaaa 553  Q
    |||||||||| | |||||||||||||||||  |||| ||||||| |||  |||| ||||||||||||||||||    
T  31719781 ggattccaactccactcatagaagagacaaattggagtcttcaacctactcaagttccattgccaagacaaaa 31719709  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 466 - 587
Target Start/End: Original strand, 8170574 - 8170695
Alignment:
Q  466 aaaaggcaatctcttggattccaacactactcatagaagagacaagatggaatcttcaatctatgcaagctccattgccaagacaaaatcttgatctcat 565  Q
    ||||| ||||| ||||||||||||| | |||| |||||||| |||| |||||||||||| |||| ||||||||||||||||||||||| ||| || ||||    
T  8170574 aaaagacaatcccttggattccaactccactcgtagaagaggcaagttggaatcttcaacctattcaagctccattgccaagacaaaaacttaatatcat 8170673  T
Q  566 ccactatgtcatctaccccctt 587  Q
    | || || || || ||||||||    
T  8170674 caacgatatcctccaccccctt 8170695  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 472 - 587
Target Start/End: Original strand, 20748552 - 20748667
Alignment:
Q  472 caatctcttggattccaacactactcatagaagagacaagatggaatcttcaatctatgcaagctccattgccaagacaaaatcttgatctcatccacta 571  Q
    ||||| ||||||||||||||| || |||| || | |||||||||| |||||||| ||| ||||||| ||||||||||||| | |||||| ||||| ||||    
T  20748552 caatcccttggattccaacaccacacataaaacaaacaagatggattcttcaatttattcaagctctattgccaagacaataccttgatatcatcaacta 20748651  T
Q  572 tgtcatctaccccctt 587  Q
    | ||||| ||||||||    
T  20748652 tatcatcgaccccctt 20748667  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 551
Target Start/End: Complemental strand, 19862029 - 19861943
Alignment:
Q  465 caaaaggcaatctcttggattccaacactactcatagaagagacaagatggaatcttcaatctatgcaagctccattgccaagacaa 551  Q
    ||||| ||||||||| |||| ||||||| | ||| || | | |||||| |||||||||||||||| ||||||||||||||| |||||    
T  19862029 caaaatgcaatctctaggatcccaacaccattcaaagtatatacaagacggaatcttcaatctattcaagctccattgccatgacaa 19861943  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 1165215 - 1165136
Alignment:
Q  88 aattttgattcttgtgacataaacccatccaacagctaagaataaaactgtgaggaaaattacagcaccaaatccgtgtc 167  Q
    |||| ||| |||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||    
T  1165215 aattgtgagtcttgtgacatatacccatccaacagccaagaataaaactgtggggaaatttacagcaccaaatccttgtc 1165136  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 50982325 - 50982261
Alignment:
Q  97 tcttgtgacataaacccatccaacagctaagaataaaactgtgaggaaaattacagcaccaaatc 161  Q
    |||||| ||| ||||||||||||||||  | |||||||||| | | ||| |||||||||||||||    
T  50982325 tcttgtcacacaaacccatccaacagcccaaaataaaactgcgtgaaaagttacagcaccaaatc 50982261  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 22842246 - 22842176
Alignment:
Q  97 tcttgtgacataaacccatccaacagctaagaataaaactgtgaggaaaattacagcaccaaatccgtgtc 167  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| |  || ||||||||| |||||| ||||    
T  22842246 tcttgtgacataaacgcatccaacagccaagaataaaactgtgggagaatttacagcacgaaatccttgtc 22842176  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 45147491 - 45147419
Alignment:
Q  88 aattttgattcttgtgacataaacccatccaacagctaagaataaaactgtgaggaaaattacagcaccaaat 160  Q
    ||||||||  ||| |||||||||| ||||||||||  |||||||||| |||| | ||||||||||||||||||    
T  45147491 aattttgaaacttatgacataaactcatccaacagtcaagaataaaattgtgggaaaaattacagcaccaaat 45147419  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 1531008 - 1530936
Alignment:
Q  88 aattttgattcttgtgacataaacccatccaacagctaagaataaaactgtgaggaaaattacagcaccaaat 160  Q
    ||||||||  ||||||| |||||  || |||| || |||||||||||||||| | ||||||||||||||||||    
T  1531008 aattttgaggcttgtgatataaattcaaccaatagttaagaataaaactgtgggaaaaattacagcaccaaat 1530936  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 552
Target Start/End: Original strand, 15472550 - 15472624
Alignment:
Q  478 cttggattccaacactactcatagaagagacaagatggaatcttcaatctatgcaagctccattgccaagacaaa 552  Q
    |||||||||||||  ||||| | |||||| ||||||| ||||||||||||    |||||||| ||||||||||||    
T  15472550 cttggattccaactttactcgttgaagaggcaagatgcaatcttcaatcttgttaagctccaatgccaagacaaa 15472624  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 552
Target Start/End: Complemental strand, 15510244 - 15510170
Alignment:
Q  478 cttggattccaacactactcatagaagagacaagatggaatcttcaatctatgcaagctccattgccaagacaaa 552  Q
    |||||||||||||  ||||| | |||||| ||||||| ||||||||||||    |||||||| ||||||||||||    
T  15510244 cttggattccaactttactcgttgaagaggcaagatgcaatcttcaatcttgttaagctccaatgccaagacaaa 15510170  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 545
Target Start/End: Complemental strand, 41814027 - 41813951
Alignment:
Q  469 aggcaatctcttggattccaacactactcatagaagagacaagatggaatcttcaatctatgcaagctccattgcca 545  Q
    |||||||| || |||| ||||| | |||||||||| || || || |||||||||||||| || || |||||||||||    
T  41814027 aggcaatccctaggatcccaactccactcatagaaaaggcacgagggaatcttcaatctttgtaaactccattgcca 41813951  T

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