View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14767_low_2 (Length: 392)
Name: NF14767_low_2
Description: NF14767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14767_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 234 - 379
Target Start/End: Original strand, 9533871 - 9534016
Alignment:
| Q |
234 |
ttcaatctttttccagtataggatcaaatggggcaaaagggtggatcaagattaaagagagagaaactatagcgtcatggtacaaaaactatagaagtga |
333 |
Q |
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| T |
9533871 |
ttcaatctttttccagtatagaatcaaatggggcaaaagggtggatcaagattaaagagagagaaactatagcgtcatggtacaaaaactatagaagtga |
9533970 |
T |
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| Q |
334 |
agtcaaacaatgtggcaccatcaaaaccaaaggaaaacaacaaaac |
379 |
Q |
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| T |
9533971 |
agtcaaacaatgtggcaccatcaaaaccaaaggaaaacaacaaaac |
9534016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 9533746 - 9533784
Alignment:
| Q |
109 |
gatgggttgttcctaaaccaaccctaaattggtgtaagg |
147 |
Q |
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| T |
9533746 |
gatgggttgttcctaaaccaaccctaaattggtgtaagg |
9533784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 9533640 - 9533675
Alignment:
| Q |
12 |
tcatcaccagacatccttaaatccttcaaaatccac |
47 |
Q |
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| T |
9533640 |
tcatcaccagacatccttaaatccttcaaaatccac |
9533675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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