View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14767_low_3 (Length: 372)
Name: NF14767_low_3
Description: NF14767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14767_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 34321255 - 34320901
Alignment:
| Q |
1 |
ttcatgctcaaacttagtcatgtaattgtcttccatgttcacaatagcttcaatcccttctccatcttttgtatccatcagaaatattatgttccttgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34321255 |
ttcatgctcaaacttagtcatgtaattgtcttccatgttcacaatagcttcaatcccttctccatcttttgtatccatcagaaatattatgttccttgaa |
34321156 |
T |
|
| Q |
101 |
gaacaaccaaaagtggtgacccatgttggatttccccacccaaaatttgtttcatacattggaaacctacaccagctactaaaagtaaacaaattttcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34321155 |
gaacaaccaaaagtggtgacccatgttggatttccccacccaaaatttgtttcatacattggaaacctacaccagctactaaaagtaaacaaattttcat |
34321056 |
T |
|
| Q |
201 |
tttcgggatgaggctcagtaacttgtttcaagcactcagatattaatgacaagttttcattctctttcgctccaaatgtttctggaataaagtcatcaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
34321055 |
tttcgggatgaggctcagtaacttgtttcaagcactcagatattaatgacaagttttcattctctttcgctccaaatgtttccggaataaagtcaccaaa |
34320956 |
T |
|
| Q |
301 |
ctgcgataacccttcttttattttggataccaactcatgtaattccatttccttc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34320955 |
ctgcgataacccttcttttattttggataccaactcatgtaattccatttccttc |
34320901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 34330163 - 34329809
Alignment:
| Q |
1 |
ttcatgctcaaacttagtcatgtaattgtcttccatgttcacaatagcttcaatcccttctccatcttttgtatccatcagaaatattatgttccttgaa |
100 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||| ||||||| ||||||||||| || |||||| |||||||||||| || ||| ||||| |
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|
| T |
34330163 |
ttcatgctcaaacttagtcatatcattctcttccatattcacaaccgcttcaatcccatccccatctcttgtatccatcaaaattatcccattcctcacg |
34330064 |
T |
|
| Q |
101 |
gaacaaccaaaagtggtgacccatgttggatttccccacccaaaatttgtttcatacattggaaacctacaccagctactaaaagtaaacaaattttcat |
200 |
Q |
| |
|
||||| || ||| || |||||| |||| |||||||||||||||| | |||||||||||||||||||||||| ||||||||| ||| ||||||| ||| |
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|
| T |
34330063 |
taacaagcactagttgtcacccatattggttttccccacccaaaatcagcttcatacattggaaacctacaccaactactaaaactaatcaaatttccat |
34329964 |
T |
|
| Q |
201 |
tttcgggatgaggctcagtaacttgtttcaagcactcagatattaatgacaagttttcattctctttcgctccaaatgtttctggaataaagtcatcaaa |
300 |
Q |
| |
|
| || | || || ||||||||||||||||||||| ||||||||| | |||| || ||||||| |||| |||||||| ||| |||| || |||| | | |
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| T |
34329963 |
tctcagaataagactcagtaacttgtttcaagcattcagatatttttaacaaattatcattctttttccctccaaatatttttggataaacgtcacaaca |
34329864 |
T |
|
| Q |
301 |
ctgcgataacccttcttttattttggataccaactcatgtaattccatttccttc |
355 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| || | || ||||||||||||| |
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|
| T |
34329863 |
ttcagataacccttcttttattttgcataccaaatcctttagttccatttccttc |
34329809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 36626813 - 36627055
Alignment:
| Q |
1 |
ttcatgctcaaacttagtcatgtaattgtcttccatgttcacaatagcttcaatcccttctccatcttttgtatccatcagaaatattatgttccttgaa |
100 |
Q |
| |
|
|||||| |||||||||| ||| ||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||| || ||||||||| |
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| T |
36626813 |
ttcatgttcaaacttagccatataattatcttccatgttcacaatcgcttcaatcccatctccatctcttgtatccatcaaaaatataatattccttgaa |
36626912 |
T |
|
| Q |
101 |
gaacaaccaaaagtggtgacccatgttggatttccccacccaaaatttgtttcatacattggaaacctacaccagctactaaaagtaaacaaattttcat |
200 |
Q |
| |
|
|| ||||| |||||||| |||| |||| |||||||| ||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||| || |
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|
| T |
36626913 |
gacaaaccagtagtggtgatccatattggttttccccatccaaaatctgcttcatacattggaaacctacaccaactactaaacgtaaacaaatttttat |
36627012 |
T |
|
| Q |
201 |
tttcgggatgaggctcagtaacttgtttcaagcactcagatat |
243 |
Q |
| |
|
| |||| || ||| || |||||||| |||||||| |||||||| |
|
|
| T |
36627013 |
tctcggaataaggttctgtaacttgcttcaagcattcagatat |
36627055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 36632055 - 36632296
Alignment:
| Q |
2 |
tcatgctcaaacttagtcatgtaattgtcttccatgttcacaatagcttcaatcccttctccatcttttgtatccatcagaaatattatgttccttgaag |
101 |
Q |
| |
|
||||| |||||||||| ||| ||||| |||| ||||||||||| |||||||||||| ||||||||| |||||||||||| |||||| || ||| |||||| |
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|
| T |
36632055 |
tcatgttcaaacttagccatataattatctttcatgttcacaagagcttcaatcccatctccatctattgtatccatcaaaaatataatattctttgaag |
36632154 |
T |
|
| Q |
102 |
aacaaccaaaagtggtgacccatgttggatttccccacccaaaatttgtttcatacattggaaacctacaccagctactaaaagtaaacaaattttcatt |
201 |
Q |
| |
|
|||||||| |||||||| |||| |||| |||||||| ||||||| || ||||||||| |||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
36632155 |
aacaaccagtagtggtgatccatattggttttccccatccaaaatctgcttcatacatcggaaacctacaccaactactaaaagtaaacaaatttttatt |
36632254 |
T |
|
| Q |
202 |
ttcgggatgaggctcagtaacttgtttcaagcactcagatat |
243 |
Q |
| |
|
|| | || ||| | |||||||| ||||||||||||||||| |
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|
| T |
36632255 |
ctccgaataaggttgtgtaacttgcttcaagcactcagatat |
36632296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 36621580 - 36621821
Alignment:
| Q |
2 |
tcatgctcaaacttagtcatgtaattgtcttccatgttcacaatagcttcaatcccttctccatcttttgtatccatcagaaatattatgttccttgaag |
101 |
Q |
| |
|
||||| ||||| |||| ||| || || |||||||||||||||| ||||||||| || ||||||||| |||||||||| |||| || | ||| |||||| |
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|
| T |
36621580 |
tcatgttcaaatttagccatatatttctcttccatgttcacaacagcttcaatgccatctccatctcttgtatccattagaagaatattattctttgaag |
36621679 |
T |
|
| Q |
102 |
aacaaccaaaagtggtgacccatgttggatttccccacccaaaatttgtttcatacattggaaacctacaccagctactaaaagtaaacaaattttcatt |
201 |
Q |
| |
|
|||||||| |||||||| |||| |||| |||||||| ||||||| || |||||||||||||||||||||||| ||||||||| ||||| ||||| ||| |
|
|
| T |
36621680 |
aacaaccagtagtggtgatccatattggttttccccatccaaaatctgcttcatacattggaaacctacaccaactactaaaaccaaacacatttttatt |
36621779 |
T |
|
| Q |
202 |
ttcgggatgaggctcagtaacttgtttcaagcactcagatat |
243 |
Q |
| |
|
||||| ||||| || ||| |||| ||||||||||||||||| |
|
|
| T |
36621780 |
ttcggattgaggttctgtagcttgcttcaagcactcagatat |
36621821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 36621880 - 36621930
Alignment:
| Q |
305 |
gataacccttcttttattttggataccaactcatgtaattccatttccttc |
355 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | || || |||||||||| |
|
|
| T |
36621880 |
gataacccttcttttattttgcataccaactcttctagtttcatttccttc |
36621930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 36632680 - 36632730
Alignment:
| Q |
305 |
gataacccttcttttattttggataccaactcatgtaattccatttccttc |
355 |
Q |
| |
|
||||||||||||||||||||| | |||||||||| || |||||||||||| |
|
|
| T |
36632680 |
gataacccttcttttattttgcagaccaactcatctagctccatttccttc |
36632730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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