View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14767_low_4 (Length: 312)

Name: NF14767_low_4
Description: NF14767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14767_low_4
NF14767_low_4
[»] chr6 (8 HSPs)
chr6 (181-305)||(13076326-13076447)
chr6 (181-305)||(13065368-13065489)
chr6 (181-305)||(13072122-13072243)
chr6 (1-104)||(13065191-13065291)
chr6 (1-104)||(13071945-13072045)
chr6 (1-104)||(13076149-13076249)
chr6 (181-293)||(13072912-13073024)
chr6 (181-293)||(13077116-13077228)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 181 - 305
Target Start/End: Original strand, 13076326 - 13076447
Alignment:
Q  181 aacttcaaattgttgagcctctttatctgctacagcttctaatgatgtactgccttctgtggactgaaatggttcttttggagatggagtttgatttttt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13076326 aacttcaaattgttgagcctctttatctgctacagcttctaatg---tactgccttctgtggactgaaatggttcttttggagatggagtttgatttttt 13076422  T
Q  281 ggtggcttaccaatttcgccctttg 305  Q
    |||||||||||||||||||| ||||    
T  13076423 ggtggcttaccaatttcgccttttg 13076447  T

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Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 181 - 305
Target Start/End: Original strand, 13065368 - 13065489
Alignment:
Q  181 aacttcaaattgttgagcctctttatctgctacagcttctaatgatgtactgccttctgtggactgaaatggttcttttggagatggagtttgatttttt 280  Q
    ||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13065368 aacttcaaattgttgagccgctttatctgctacagcttctaatg---tactgccttctgtggactgaaatggttcttttggagatggagtttgatttttt 13065464  T
Q  281 ggtggcttaccaatttcgccctttg 305  Q
    |||||||||||||||||||| ||||    
T  13065465 ggtggcttaccaatttcgccttttg 13065489  T

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Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 181 - 305
Target Start/End: Original strand, 13072122 - 13072243
Alignment:
Q  181 aacttcaaattgttgagcctctttatctgctacagcttctaatgatgtactgccttctgtggactgaaatggttcttttggagatggagtttgatttttt 280  Q
    ||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13072122 aacttcaaattgttgagccgctttatctgctacagcttctaatg---tactgccttctgtggactgaaatggttcttttggagatggagtttgatttttt 13072218  T
Q  281 ggtggcttaccaatttcgccctttg 305  Q
    |||||||||||||||||||| ||||    
T  13072219 ggtggcttaccaatttcgccttttg 13072243  T

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Target: chr6; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13065191 - 13065291
Alignment:
Q  1 gatttcattgtgctttttccatccagttgtttcacttttaccttctttttgttcttctatttcatgtttagtttcctcgtctttgattatgcattcttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||    
T  13065191 gatttcattgtgctttttccatccagttgtttcacttttaccttctttttg---ttctatttcgtgtttagtttcctcgtctttgattatgcattcttca 13065287  T
Q  101 actt 104  Q
    ||||    
T  13065288 actt 13065291  T

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Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13071945 - 13072045
Alignment:
Q  1 gatttcattgtgctttttccatccagttgtttcacttttaccttctttttgttcttctatttcatgtttagtttcctcgtctttgattatgcattcttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||    
T  13071945 gatttcattgtgctttttccatccagttgtttcacttttaccttctttttg---ttctatttcgtgtttagtttcctcgtctttgattatgcattcttca 13072041  T
Q  101 actt 104  Q
    ||||    
T  13072042 actt 13072045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13076149 - 13076249
Alignment:
Q  1 gatttcattgtgctttttccatccagttgtttcacttttaccttctttttgttcttctatttcatgtttagtttcctcgtctttgattatgcattcttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||    
T  13076149 gatttcattgtgctttttccatccagttgtttcacttttaccttctttttg---ttctatttcgtgtttagtttcctcgtctttgattatgcattcttca 13076245  T
Q  101 actt 104  Q
    ||||    
T  13076246 actt 13076249  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 13072912 - 13073024
Alignment:
Q  181 aacttcaaattgttgagcctctttatctgctacagcttctaatgatgtactgccttctgtggactgaaatggttcttttggagatggagtttgatttttt 280  Q
    |||||||||||||||| || ||||||||||| | |||||||||  | |||| ||  || |||| | ||||||||||||||||||  || ||||||||| |    
T  13072912 aacttcaaattgttgaaccactttatctgctgctgcttctaatattctacttcccactatggaatcaaatggttcttttggagacagattttgattttct 13073011  T
Q  281 ggtggcttaccaa 293  Q
     ||||| ||||||    
T  13073012 tgtggcataccaa 13073024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 13077116 - 13077228
Alignment:
Q  181 aacttcaaattgttgagcctctttatctgctacagcttctaatgatgtactgccttctgtggactgaaatggttcttttggagatggagtttgatttttt 280  Q
    |||||||||||||||| || ||||||||||| | |||||||||  | |||| ||  || |||| | ||||||||||||||||||  || ||||||||| |    
T  13077116 aacttcaaattgttgaaccactttatctgctgctgcttctaatattctacttcccactatggaatcaaatggttcttttggagacagattttgattttct 13077215  T
Q  281 ggtggcttaccaa 293  Q
     ||||| ||||||    
T  13077216 tgtggcataccaa 13077228  T

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