View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14767_low_5 (Length: 222)
Name: NF14767_low_5
Description: NF14767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14767_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 27848760 - 27848629
Alignment:
| Q |
74 |
ttccttcaccaggtctaacaggaacatacccaacgcctcctttgcctcctccaccaggaacatcaccacctcctttgcccggtccaccaggaacataccc |
173 |
Q |
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| T |
27848760 |
ttccttcaccaggtccaacaggaacatacccaacgcctcctttccctccttcaccaggaacatcaccacctccttcgcccggtccaccaggaacataccc |
27848661 |
T |
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| Q |
174 |
accacctacatcgcctcctccaccaggaatat |
205 |
Q |
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| T |
27848660 |
accacctacatcacctcctccaccaggaatat |
27848629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 27848690 - 27848596
Alignment:
| Q |
75 |
tccttcaccaggtctaacaggaacatacccaacgcctcctttgcctcctccaccaggaacatcaccacctcctttgcccggtccaccaggaacat |
169 |
Q |
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| T |
27848690 |
tccttcgcccggtccaccaggaacatacccaccacctacatcacctcctccaccaggaatatcaccacctccttcacccggtccaccaggaacat |
27848596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 27848550 - 27848490
Alignment:
| Q |
119 |
ctcctccaccaggaacat---caccacctcctttgcccggtccaccaggaacatacccacc |
176 |
Q |
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| T |
27848550 |
ctcctccaccaggaacatgtccaccaactccttcacccggtccaccaggaacatatccacc |
27848490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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