View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14768_low_2 (Length: 526)

Name: NF14768_low_2
Description: NF14768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14768_low_2
NF14768_low_2
[»] chr3 (3 HSPs)
chr3 (17-331)||(18161265-18161579)
chr3 (349-519)||(18160931-18161104)
chr3 (384-444)||(19407206-19407263)
[»] chr1 (1 HSPs)
chr1 (69-304)||(33899020-33899260)
[»] chr8 (10 HSPs)
chr8 (65-221)||(19409112-19409267)
chr8 (65-221)||(19456131-19456286)
chr8 (102-304)||(19459358-19459565)
chr8 (65-221)||(19524791-19524946)
chr8 (102-304)||(19557036-19557243)
chr8 (65-221)||(19471082-19471235)
chr8 (65-221)||(19542006-19542159)
chr8 (65-221)||(19590538-19590691)
chr8 (65-258)||(19403193-19403373)
chr8 (133-239)||(5831587-5831695)
[»] chr6 (3 HSPs)
chr6 (109-235)||(6796471-6796598)
chr6 (69-229)||(7441159-7441318)
chr6 (180-208)||(33823151-33823179)
[»] scaffold0653 (1 HSPs)
scaffold0653 (180-210)||(964-994)
[»] chr7 (2 HSPs)
chr7 (180-210)||(9287323-9287353)
chr7 (180-210)||(9297115-9297145)
[»] chr4 (1 HSPs)
chr4 (180-210)||(35752692-35752722)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 18161579 - 18161265
Alignment:
Q  17 cctccttggtaaggaaaagtgtcggtttgcttacaaccatactataataaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaattt 116  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18161579 cctcattggtaaggaaaagtgtcggtttgcttacaaccatacgataataaattttctcttggcaagtaattcctggtaaactcccgacttgctcaaattt 18161480  T
Q  117 atctagaagaggagtgttagtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  18161479 atctagaagaggagtgttagtggatggtgttagatcggattgtgtgtggtgtccgaggaaacgagaggtggaggatcacttgttttgtcgatgtaacttg 18161380  T
Q  217 gttgcggaaatttggtatttgatctttaaatggattggaacggtgtcattctaccatgtggtctccctcatagattatttctcttcttattctttatcaa 316  Q
    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18161379 gtagcggaaatttggtatttgatctttaaatggattggaatggtgtcattctaccatgtggtctctctcctagattatttctcttcttattctttatcaa 18161280  T
Q  317 gaaagcaccctaagg 331  Q
     ||||||||||||||    
T  18161279 aaaagcaccctaagg 18161265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 349 - 519
Target Start/End: Complemental strand, 18161104 - 18160931
Alignment:
Q  349 taatgcaggaatttaagaatcagaaacacaataaaatacactgtcagtggagtcaactctt-ctagctacattatattctgcttaattcattctttc--c 445  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||  |||  | ||||||||||||||||||||||| ||||  |    
T  18161104 taatgcaggaatttaagaatcagaaatgcaataaaatacactgtcagtggagtcaaccctggctacattcattatattctgcttaattcattatttctcc 18161005  T
Q  446 tttcattcagtacataaggtagagaataataagacagcttcctagcaaataacagttgtatgcaatagcctatg 519  Q
    |||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||| |||||||    
T  18161004 tttcattctgtacataaggtagaaaataataagacagcttccttgaaaataacagttgtatacaattgcctatg 18160931  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 19407263 - 19407206
Alignment:
Q  384 atacactgtcagtggagtcaactcttctagctacattatattctgcttaattcattctttc 444  Q
    |||||||||| ||||||||||||||    || |||||||||||||||||||||||| ||||    
T  19407263 atacactgtccgtggagtcaactctg---gcaacattatattctgcttaattcattatttc 19407206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 69 - 304
Target Start/End: Complemental strand, 33899260 - 33899020
Alignment:
Q  69 tttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtggtgt 168  Q
    ||||||||| |||||||||| ||||| ||||| || | |||||||| |||||| |||||||||||||||| |||| ||||| | ||||||||||||||||    
T  33899260 tttctcttggcaagtaattcttggtagactccggattcgctcaaatgtatctaaaagaggagtgttagtgaatggagttagtttggattgtgtgtggtgt 33899161  T
Q  169 ctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtatttgatctttaaatggattggaacggtgtcattct 268  Q
     ||||||  | ||||||  | |||||||||||||| ||||||||||| ||||||||||| || |||| ||| ||||||||||||| ||||| ||||||||    
T  33899160 ttgaggattcaagaggtaaatgatcacttgttttgcagatgtaactttgttgcggaaatatgatattcgatttttaaatggattgtaacggggtcattct 33899061  T
Q  269 acc-----atgtggtctccctcatagattatttctcttctt 304  Q
    |||     ||||||| |||||| ||||| |||| |||||||    
T  33899060 accctaaaatgtggtttccctcctagatcatttatcttctt 33899020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 19409112 - 19409267
Alignment:
Q  65 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtg 164  Q
    ||||||||||||||| |||||||  || || |||||||||||||||||||||||||  ||||||||||||||||||||||||||  || || | ||||||    
T  19409112 aaattttctcttgcctagtaatttttg-tagactcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgttatttcagactctgtgtg 19409210  T
Q  165 gtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 221  Q
    |||||  ||||  ||||||||| |||||||||||||||||||| ||||||| |||||    
T  19409211 gtgtcctaggattcgagaggtgaaggatcacttgttttgtagaagtaacttcgttgc 19409267  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 19456131 - 19456286
Alignment:
Q  65 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtg 164  Q
    ||||||||||||||| |||||||  || || |||||||||||||||||||||||||  ||||||||||||||||||||||||||  || || | ||||||    
T  19456131 aaattttctcttgcctagtaatttttg-tagactcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgttatttcagactctgtgtg 19456229  T
Q  165 gtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 221  Q
    |||||  ||||  ||||||||| |||||||||||||||||||| ||||||| |||||    
T  19456230 gtgtcctaggattcgagaggtgaaggatcacttgttttgtagaagtaacttcgttgc 19456286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 102 - 304
Target Start/End: Complemental strand, 19459565 - 19459358
Alignment:
Q  102 gacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttt 201  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||  ||||  |||||||||||||||| ||| |||    
T  19459565 gacttgctcaa-tttatctataagaggagtgttagtggatggtgttagttcggattgtgggtggtgtccaaggattcgagaggtggaggatcgcttattt 19459467  T
Q  202 tgtagatgtaacttggttgcggaaatttggtatttgatctttaaatggattggaacggtg-tcattctacc-----atgtggtctccctcatagattatt 295  Q
    ||||||||||||||   ||| || ||||| ||||  || ||||||||||| ||||||| | ||||||||||      ||| || |||||| |||||||||    
T  19459466 tgtagatgtaacttcactgcagacatttgatattcaatttttaaatggatcggaacggagatcattctacctagaagtgttgtttccctcctagattatt 19459367  T
Q  296 tctcttctt 304  Q
    |||||||||    
T  19459366 tctcttctt 19459358  T

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Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 19524946 - 19524791
Alignment:
Q  65 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtg 164  Q
    ||||||||||||||| |||||||  || || |||||||||||||||||||||||||  ||||||||||||||||||||||||||  || || | ||||||    
T  19524946 aaattttctcttgcctagtaatttttg-tagactcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgttatttcagactctgtgtg 19524848  T
Q  165 gtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 221  Q
    |||||  ||||  ||||||||| |||||||||||||||||||| ||||||| |||||    
T  19524847 gtgtcctaggattcgagaggtgaaggatcacttgttttgtagaagtaacttcgttgc 19524791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 102 - 304
Target Start/End: Complemental strand, 19557243 - 19557036
Alignment:
Q  102 gacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtggaggatcacttgttt 201  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||  ||||  |||||||||||||||| ||| |||    
T  19557243 gacttgctcaa-tttatctataagaggagtgttagtggatggtgttagttcggattgtgggtggtgtccaaggattcgagaggtggaggatcgcttattt 19557145  T
Q  202 tgtagatgtaacttggttgcggaaatttggtatttgatctttaaatggattggaacggtg-tcattctacc-----atgtggtctccctcatagattatt 295  Q
    ||||||||||||||   ||| || ||||| ||||  || ||||||||||| ||||||| | ||||||||||      ||| || |||||| |||||||||    
T  19557144 tgtagatgtaacttcactgcagacatttgatattcaatttttaaatggatcggaacggagatcattctacctagaagtgttgtttccctcctagattatt 19557045  T
Q  296 tctcttctt 304  Q
    |||||||||    
T  19557044 tctcttctt 19557036  T

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Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 19471235 - 19471082
Alignment:
Q  65 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtg 164  Q
    ||||||||||||||| |||||||| || || | |||||||||||||||||||||||  ||||||||||||||||||||||||||  || |||||||||||    
T  19471235 aaattttctcttgcctagtaattcttg-tagattcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgttatttcagattgtgtgtg 19471137  T
Q  165 gtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 221  Q
    |||||  ||||  |  |||||| ||||||||||| |||||||| ||||||| |||||    
T  19471136 gtgtcctaggattc--gaggtgaaggatcacttgctttgtagacgtaacttcgttgc 19471082  T

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Target: chr8; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 19542159 - 19542006
Alignment:
Q  65 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtg 164  Q
    ||||||||||||||| |||||||| || || | |||||||||||||||||||||||  ||||||||||||||||||||||||||  || |||||||||||    
T  19542159 aaattttctcttgcctagtaattcttg-tagattcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgttatttcagattgtgtgtg 19542061  T
Q  165 gtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 221  Q
    |||||  ||||  |  |||||| ||||||||||| |||||||| ||||||| |||||    
T  19542060 gtgtcctaggattc--gaggtgaaggatcacttgctttgtagacgtaacttcgttgc 19542006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 19590538 - 19590691
Alignment:
Q  65 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtg 164  Q
    ||||||||||||||| |||||||| || || | |||||||||||||||||||||||  ||||||||||||||||||||||||||  || |||||||||||    
T  19590538 aaattttctcttgcctagtaattcttg-tagattcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgttatttcagattgtgtgtg 19590636  T
Q  165 gtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgc 221  Q
    |||||  ||||  |  |||||| ||||||||||| |||||||| ||||||| |||||    
T  19590637 gtgtcctaggattc--gaggtgaaggatcacttgctttgtagacgtaacttcgttgc 19590691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 258
Target Start/End: Original strand, 19403193 - 19403373
Alignment:
Q  65 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtg 164  Q
    ||||||||||||||| |||||||| || || ||||||||||||||||||||| ||||||||||||           ||||||||| | ||| ||||||||    
T  19403193 aaattttctcttgcctagtaattcttg-tagactcccgacttgctcaaatttgtctagaagagga-----------tggtgttagtttggaatgtgtgtg 19403280  T
Q  165 gtgtctgaggaaacgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaatttggtatttgatctttaaatggattggaacg 258  Q
    |||||  || |  |||||| |||||||||||||||||||||||| ||||||  |||| || |||||||||| ||| ||||||||||| ||||||    
T  19403281 gtgtcctagaattcgagagctggaggatcacttgttttgtagat-taacttcattgcagacatttggtattcgatttttaaatggatcggaacg 19403373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 5831695 - 5831587
Alignment:
Q  133 ttagtggatggtgttagatcggattgtgtgtggtgtctgaggaaacgagaggtg--gaggatcacttgttttgtagatgtaacttggttgcggaaatttg 230  Q
    ||||||||||||||||| ||| |||||||||||||||||||||  | |||||||  |||||||||||||||||||||| ||| || |||| ||||||||     
T  5831695 ttagtggatggtgttagttcgaattgtgtgtggtgtctgaggattcaagaggtgtggaggatcacttgttttgtagatctaattttgttgtggaaattta 5831596  T
Q  231 gtatttgat 239  Q
    |||||||||    
T  5831595 gtatttgat 5831587  T

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Target: chr6 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 6796598 - 6796471
Alignment:
Q  109 tcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtggtgtctgaggaaa-cgagaggtggaggatcacttgttttgtaga 207  Q
    ||||||||||||||||||||||| ||||||| ||||||| | ||||||| |||||||||| || || |  |||||| |||||||||||||||||||||||    
T  6796598 tcaaatttatctagaagaggagttttagtgggtggtgtttgttcggattatgtgtggtgtatgggggattcgagagatggaggatcacttgttttgtaga 6796499  T
Q  208 tgtaacttggttgcggaaatttggtatt 235  Q
    |||||||| |||||||||||||||||||    
T  6796498 tgtaactttgttgcggaaatttggtatt 6796471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 7441159 - 7441318
Alignment:
Q  69 tttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgtgtgtggtgt 168  Q
    |||||||||  ||||||||  ||||| ||| || ||| |||||||||||||||||||| |||||||||||||| ||||| | | ||||| ||||||||||    
T  7441159 tttctcttggtaagtaatttttggtagacttcccactcgctcaaatttatctagaagatgagtgttagtggatagtgtttgtttggattatgtgtggtgt 7441258  T
Q  169 ctgaggaaa--cgagaggtggaggatcacttgttttgtagatgtaacttggttgcggaaattt 229  Q
        |||||  | |||||||||| ||||||||||||||||||||||||| |||  ||||||||    
T  7441259 ---tggaaattcaagaggtggagaatcacttgttttgtagatgtaactttgttatggaaattt 7441318  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 33823179 - 33823151
Alignment:
Q  180 agaggtggaggatcacttgttttgtagat 208  Q
    |||||||||||||||||||||||||||||    
T  33823179 agaggtggaggatcacttgttttgtagat 33823151  T

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Target: scaffold0653 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 964 - 994
Alignment:
Q  180 agaggtggaggatcacttgttttgtagatgt 210  Q
    |||||||||||||||||||||||||||||||    
T  964 agaggtggaggatcacttgttttgtagatgt 994  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 9287353 - 9287323
Alignment:
Q  180 agaggtggaggatcacttgttttgtagatgt 210  Q
    |||||||||||||||||||||||||||||||    
T  9287353 agaggtggaggatcacttgttttgtagatgt 9287323  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 9297145 - 9297115
Alignment:
Q  180 agaggtggaggatcacttgttttgtagatgt 210  Q
    |||||||||||||||||||||||||||||||    
T  9297145 agaggtggaggatcacttgttttgtagatgt 9297115  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 35752722 - 35752692
Alignment:
Q  180 agaggtggaggatcacttgttttgtagatgt 210  Q
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T  35752722 agaggtggaggatcacttgttttgtagatgt 35752692  T

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