View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14768_low_4 (Length: 351)
Name: NF14768_low_4
Description: NF14768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14768_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 44720113 - 44719799
Alignment:
| Q |
18 |
catacgaaaaaatacaaataacttcagattaaaccaaacatctggttggtctgagtgctaagaggcttggccatcttaaacaaatagctaattgaatatg |
117 |
Q |
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| T |
44720113 |
catacgaaaaaatacaaataacttcagattaaaccaaacatctggttggtctgagttctaagaggcttggccatcttaaacaaatagctgattgaatatg |
44720014 |
T |
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| Q |
118 |
gaccgctgaataatgaaactcttcaccagatcttctatttgttattttcttttgcaacattagttgattataattaagtaatcacgtttcttctaatgca |
217 |
Q |
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| T |
44720013 |
gaccgctgaataatgaaactcttcaccagatcttctatttgttattttcttttgcaacattagttgattataattaagtaatcacctttcttctaatgca |
44719914 |
T |
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| Q |
218 |
gactacctacgaagttttgggctgaaaatggactgttgtcaaatgccaagttaatctaaataaaattgattttggcactacaactttgcattacattgtc |
317 |
Q |
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| T |
44719913 |
gactacctacgaagttttgggctgaaaatggaccgttgtcaaatgccaagttaatctaaataaaattgattttggcactacaactttgcattacattgtc |
44719814 |
T |
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| Q |
318 |
ctaatatgctccgat |
332 |
Q |
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| T |
44719813 |
ttaatatgctccgat |
44719799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 43170511 - 43170607
Alignment:
| Q |
162 |
ttttcttttgcaacattagttgattataattaagtaatcacgtttcttctaatgcagactacctacgaagttttgggctgaaaatggactgttgtcaa |
259 |
Q |
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| T |
43170511 |
ttttcttttgcggcgttagttgattataattaagtaattacctttcttctaatg-tgacggccaactaagttttgggctagaaatggactgttgtcaa |
43170607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 43169952 - 43169990
Alignment:
| Q |
66 |
gtctgagtgctaagaggcttggccatcttaaacaaatag |
104 |
Q |
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| T |
43169952 |
gtctgagtgctgagaggcttggtcatcttaaacaaatag |
43169990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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