View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14769_high_2 (Length: 467)

Name: NF14769_high_2
Description: NF14769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14769_high_2
NF14769_high_2
[»] chr5 (12 HSPs)
chr5 (1-449)||(39477641-39478087)
chr5 (189-246)||(25461902-25461959)
chr5 (194-246)||(24030549-24030601)
chr5 (201-246)||(7319158-7319203)
chr5 (189-246)||(32372490-32372547)
chr5 (199-246)||(19460523-19460570)
chr5 (184-246)||(3735638-3735700)
chr5 (184-246)||(7706126-7706188)
chr5 (192-246)||(9202885-9202939)
chr5 (245-291)||(24030425-24030471)
chr5 (209-246)||(7984874-7984911)
chr5 (193-246)||(40426632-40426685)
[»] chr2 (9 HSPs)
chr2 (190-246)||(15757813-15757869)
chr2 (187-246)||(41407165-41407224)
chr2 (189-246)||(1633693-1633750)
chr2 (185-246)||(43570288-43570349)
chr2 (245-290)||(43279554-43279599)
chr2 (377-417)||(14279091-14279131)
chr2 (243-287)||(40279195-40279239)
chr2 (199-243)||(41851411-41851455)
chr2 (192-243)||(41880642-41880694)
[»] chr8 (8 HSPs)
chr8 (192-246)||(40980999-40981053)
chr8 (189-238)||(1058229-1058278)
chr8 (189-246)||(14956442-14956499)
chr8 (210-246)||(36963492-36963528)
chr8 (375-421)||(17595110-17595156)
chr8 (245-290)||(15180541-15180586)
chr8 (193-246)||(29819027-29819080)
chr8 (189-242)||(35534760-35534813)
[»] chr7 (12 HSPs)
chr7 (188-246)||(38500065-38500123)
chr7 (188-246)||(33128622-33128680)
chr7 (200-246)||(47795844-47795890)
chr7 (189-246)||(27863844-27863901)
chr7 (194-246)||(18865197-18865249)
chr7 (189-246)||(9210494-9210551)
chr7 (245-290)||(19022610-19022655)
chr7 (193-246)||(21568775-21568828)
chr7 (209-246)||(23989631-23989668)
chr7 (245-289)||(4970819-4970863)
chr7 (206-246)||(33678675-33678715)
chr7 (188-244)||(45263958-45264014)
[»] chr1 (22 HSPs)
chr1 (189-246)||(14576800-14576857)
chr1 (190-246)||(41505554-41505610)
chr1 (245-329)||(49938747-49938831)
chr1 (192-246)||(5894300-5894354)
chr1 (192-246)||(27820477-27820531)
chr1 (189-247)||(38247320-38247377)
chr1 (245-290)||(17603409-17603454)
chr1 (186-247)||(33546596-33546657)
chr1 (189-246)||(41195341-41195398)
chr1 (193-246)||(47498980-47499033)
chr1 (245-289)||(37517220-37517264)
chr1 (184-240)||(45661248-45661304)
chr1 (194-246)||(51688576-51688628)
chr1 (188-239)||(17603525-17603576)
chr1 (193-244)||(24562452-24562503)
chr1 (192-246)||(1510456-1510510)
chr1 (200-246)||(14331666-14331712)
chr1 (188-246)||(22343953-22344011)
chr1 (189-239)||(49938614-49938664)
chr1 (245-290)||(3234040-3234085)
chr1 (246-287)||(5741607-5741648)
chr1 (340-420)||(2037342-2037421)
[»] chr3 (16 HSPs)
chr3 (194-246)||(30956773-30956825)
chr3 (194-246)||(30972585-30972637)
chr3 (188-246)||(35959603-35959661)
chr3 (189-246)||(34034037-34034094)
chr3 (206-246)||(39980612-39980652)
chr3 (199-246)||(31365419-31365466)
chr3 (200-246)||(28240213-28240259)
chr3 (240-323)||(36631043-36631126)
chr3 (240-290)||(39980724-39980774)
chr3 (245-287)||(49034291-49034333)
chr3 (201-246)||(2719347-2719392)
chr3 (192-245)||(46886835-46886888)
chr3 (206-246)||(1508728-1508768)
chr3 (194-246)||(35328300-35328351)
chr3 (241-289)||(36189562-36189610)
chr3 (187-243)||(42800063-42800119)
[»] chr6 (7 HSPs)
chr6 (188-246)||(6538382-6538440)
chr6 (192-246)||(264250-264304)
chr6 (200-246)||(34430593-34430639)
chr6 (200-246)||(35069439-35069485)
chr6 (207-240)||(1310281-1310314)
chr6 (200-244)||(8365113-8365157)
chr6 (210-242)||(18076083-18076115)
[»] scaffold0018 (1 HSPs)
scaffold0018 (189-246)||(157973-158030)
[»] chr4 (11 HSPs)
chr4 (193-246)||(27030-27083)
chr4 (189-241)||(45935365-45935417)
chr4 (199-246)||(3155489-3155536)
chr4 (199-246)||(44138445-44138492)
chr4 (379-416)||(3603507-3603544)
chr4 (193-246)||(17204008-17204061)
chr4 (245-289)||(9760440-9760484)
chr4 (376-420)||(40829651-40829695)
chr4 (194-246)||(44863099-44863151)
chr4 (194-246)||(49202527-49202579)
chr4 (189-245)||(50662870-50662926)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 39477641 - 39478087
Alignment:
Q  1 cagaaataataggtcataatacattaaaagttgaagtaggaaaagaagttacaacttacaatgattgactttttaagtttacttttagaatatcactatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39477641 cagaaataataggtcataatacattaaaagttgaagtaggaaaagaagttacaacttacaatgattgactttttaagtttacttttagaatatcactatc 39477740  T
Q  101 aaacggtgnnnnnnnnnngtacagcactttccaaataaataatactatagtgttttttgtctcggaaaaatactcaataacagactttgggcctgttggg 200  Q
    |  |||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39477741 a--cggtgttttttttttgtacagcactttccaaataaataatactatagtgttttttgtctcggaaaaatactcaataacagactttgggcctgttggg 39477838  T
Q  201 ataagcagcttatttgcagcttataggacaagcgcttatcatgatataagttatttttataagctatgttagagaacttctgaaaataagcagnnnnnnn 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  39477839 ataagcagcttatttgcagcttataggacaagcgcttatcatgatataagttatttttataagctatgttagagaacttctgaaaataagcagaaaaaaa 39477938  T
Q  301 cttttgaaaattgtcatcagctgtgttcaaatataggagatattcattaaccatgatttggattcaaacatgcaattgaaaatcgtggttaattgtgtta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39477939 cttttgaaaattgtcatcagctgtgttcaaatataggagatattcattaaccatgatttggattcaaacatgcaattgaaaatcgtggttaattgtgtta 39478038  T
Q  401 agtggatgattaatgagttgaaacaaattatgtgtcaatatcatttctc 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39478039 agtggatgattaatgagttgaaacaaattatgtgtcaatatcatttctc 39478087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 25461959 - 25461902
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||| |||||||||| ||||||| ||||||||  |||||||||||||||||||    
T  25461959 gggcctgtttggataagcaggttatttgtagcttataacacaagcgcttatcatgata 25461902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 24030601 - 24030549
Alignment:
Q  194 tgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||| ||||||||||||||||||||| |||||| ||||||||||||    
T  24030601 tgtttggataaacagcttatttgcagcttatagcacaagcacttatcatgata 24030549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 7319203 - 7319158
Alignment:
Q  201 ataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||    
T  7319203 ataaacagcttatttacagcttatagcacaagcgcttatcatgata 7319158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 32372490 - 32372547
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||| |||||| || |||||||||||||||||| |||||| ||||||||||||    
T  32372490 gggcatgtttggataaacaacttatttgcagcttatagcacaagcacttatcatgata 32372547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 19460570 - 19460523
Alignment:
Q  199 ggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| ||||||||||||||||||||| ||||  |||||||||||||    
T  19460570 ggataaacagcttatttgcagcttatagcacaaatgcttatcatgata 19460523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 3735700 - 3735638
Alignment:
Q  184 actttgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| ||||||||| |||||| || | |||||||||||||||| ||||| | |||||||||||    
T  3735700 acttggggcctgtttggataaacaacctatttgcagcttatagcacaagagattatcatgata 3735638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 7706188 - 7706126
Alignment:
Q  184 actttgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| ||||||||| | |||| || ||||||||||| |||||| ||||| |||||||||||||    
T  7706188 acttagggcctgtttgtataaacaacttatttgcaggttatagcacaagtgcttatcatgata 7706126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 9202939 - 9202885
Alignment:
Q  192 cctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| |||||| || |||||||||||||||||| ||||| | |||||||||||    
T  9202939 cctgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgata 9202885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 24030471 - 24030425
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataagc 291  Q
    |||||||| |||||||||||||| ||||| ||||| |||||||||||    
T  24030471 tataagttgtttttataagctatattagataacttatgaaaataagc 24030425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 7984874 - 7984911
Alignment:
Q  209 cttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  7984874 cttatttgcagcttatagtacatgcgcttatcatgata 7984911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 40426632 - 40426685
Alignment:
Q  193 ctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| |||||| || || ||||||||||||||| |||||| ||||||||||||    
T  40426632 ctgtttggataaacaactcatttgcagcttatagcacaagcacttatcatgata 40426685  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 15757869 - 15757813
Alignment:
Q  190 ggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||    
T  15757869 ggcctgtttggataaacagcttattttcagcttatagcacaagcgcttatcatgata 15757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 41407165 - 41407224
Alignment:
Q  187 ttgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||| |||||| |||||| |||||||||||||| |||||||||||||||||||    
T  41407165 ttggccctgtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgata 41407224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 1633750 - 1633693
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||| |||||| ||||||||||||||||||||| | ||| |||||||||||||    
T  1633750 gggcctgtttggataaacagcttatttgcagcttatagcagaagtgcttatcatgata 1633693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 43570288 - 43570349
Alignment:
Q  185 ctttgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| | |||| || ||| ||||||||||||||||||||| |||||| ||||||||||||    
T  43570288 ctttggccgtgtttgggtaaacagcttatttgcagcttatagcacaagcacttatcatgata 43570349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 43279599 - 43279554
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataag 290  Q
    |||||||| |||||||||||||| || |||||||| ||||||||||    
T  43279599 tataagttgtttttataagctatattggagaacttgtgaaaataag 43279554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 14279131 - 14279091
Alignment:
Q  377 tgaaaatcgtggttaattgtgttaagtggatgattaatgag 417  Q
    |||||||||||||||||||||||  ||||||| ||||||||    
T  14279131 tgaaaatcgtggttaattgtgttttgtggatggttaatgag 14279091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 40279195 - 40279239
Alignment:
Q  243 gatataagttatttttataagctatgttagagaacttctgaaaat 287  Q
    |||||||||| |||| |||||||||||| |||||||| |||||||    
T  40279195 gatataagttgttttcataagctatgttggagaacttatgaaaat 40279239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 41851411 - 41851455
Alignment:
Q  199 ggataagcagcttatttgcagcttataggacaagcgcttatcatg 243  Q
    |||||| || |||||||||||| ||||| ||||||||||||||||    
T  41851411 ggataaacatcttatttgcagcatatagcacaagcgcttatcatg 41851455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 41880694 - 41880642
Alignment:
Q  192 cctgttgggataagcagctta-tttgcagcttataggacaagcgcttatcatg 243  Q
    |||||| |||||| || |||| |||||||||||||| ||||||||||||||||    
T  41880694 cctgtttggataaacaacttactttgcagcttatagcacaagcgcttatcatg 41880642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 40980999 - 40981053
Alignment:
Q  192 cctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  40980999 cctgtttggataaacagcttatttgcagcttatagcacaagcgcttatcttgata 40981053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 1058278 - 1058229
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgctta 238  Q
    ||||||||| | |||| ||||||||||||||||||||| |||||||||||    
T  1058278 gggcctgtttgaataaacagcttatttgcagcttatagcacaagcgctta 1058229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 14956499 - 14956442
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||| |||||| || |||||||||||||||||| |||| ||||||||||||||    
T  14956499 gggcttgtttggataaacaacttatttgcagcttatagcacaatcgcttatcatgata 14956442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 36963528 - 36963492
Alignment:
Q  210 ttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||||||||||| |||||||||||||||||||    
T  36963528 ttatttgcagcttatagcacaagcgcttatcatgata 36963492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 17595110 - 17595156
Alignment:
Q  375 attgaaaatcgtggttaattgtgttaagtggatgattaatgagttga 421  Q
    |||||||||||||||||||||| || |  ||||||||||||||||||    
T  17595110 attgaaaatcgtggttaattgtatttaacggatgattaatgagttga 17595156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 15180541 - 15180586
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataag 290  Q
    |||||||| ||| |||||||||| || |||||||||||||||||||    
T  15180541 tataagttgtttctataagctatattggagaacttctgaaaataag 15180586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 29819080 - 29819027
Alignment:
Q  193 ctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| |||||| || |||||||||||||||||| | ||| |||||||||||||    
T  29819080 ctgtttggataaacaacttatttgcagcttatagcaaaagggcttatcatgata 29819027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 35534813 - 35534760
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcat 242  Q
    ||||||||| ||| || ||||||||||||||||||||| ||| ||| |||||||    
T  35534813 gggcctgtttggaaaaacagcttatttgcagcttatagcacaggcgtttatcat 35534760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 38500123 - 38500065
Alignment:
Q  188 tgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||||  ||||| |||||||||||||| |||||| |||||||||||||||||||    
T  38500123 tgggcctgtttagataaacagcttatttgcagtttatagcacaagcgcttatcatgata 38500065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 33128622 - 33128680
Alignment:
Q  188 tgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||||||| |||||| |||||||||||||||||| || |||| | ||||||||||||    
T  33128622 tgggcctgtttggataaacagcttatttgcagcttacagcacaaacacttatcatgata 33128680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 47795844 - 47795890
Alignment:
Q  200 gataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||    
T  47795844 gataaacagcttatttgcagcttatagcataagcgcttatcatgata 47795890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 27863901 - 27863844
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||| |||||| || |||||||| ||||||||| ||||| |||||||||||||    
T  27863901 gggcctgtttggataaacaacttatttgtagcttatagcacaagtgcttatcatgata 27863844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 18865249 - 18865197
Alignment:
Q  194 tgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||| || |||||||||||||||||| |||| ||||||||||||||    
T  18865249 tgtttggataaacaacttatttgcagcttatagcacaaacgcttatcatgata 18865197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 9210494 - 9210551
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||| |||||| |||||||||||||||||||||  ||| |  |||||||||||    
T  9210494 gggcctgtttggataaacagcttatttgcagcttatagcgcaaacatttatcatgata 9210551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 19022655 - 19022610
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataag 290  Q
    |||||||| |||||||||||||| || |||||||| ||||||||||    
T  19022655 tataagttgtttttataagctatattggagaacttatgaaaataag 19022610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 21568828 - 21568775
Alignment:
Q  193 ctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| |||||| |||||| |||||||||||||| | ||| |||||||||||||    
T  21568828 ctgtttggataaacagcttgtttgcagcttatagcataagtgcttatcatgata 21568775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 23989668 - 23989631
Alignment:
Q  209 cttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  23989668 cttatttgcagcttatagtacacgcgcttatcatgata 23989631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 4970863 - 4970819
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataa 289  Q
    |||||||| |||||||||| ||| ||||||||||| |||||||||    
T  4970863 tataagttctttttataagatatattagagaacttatgaaaataa 4970819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 33678675 - 33678715
Alignment:
Q  206 cagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||||||| ||||||| ||||| |||||||||||||    
T  33678675 cagcttatttgcatcttatagcacaagtgcttatcatgata 33678715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 45263958 - 45264014
Alignment:
Q  188 tgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatga 244  Q
    |||||||||| |||||| || ||||||||| ||||||   |||||||||||||||||    
T  45263958 tgggcctgtttggataaacaacttatttgcggcttatcacacaagcgcttatcatga 45264014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 14576857 - 14576800
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||||||||||||| || ||||||| |||||||||| |||||| ||||||||||||    
T  14576857 gggcctgttgggataaacatcttatttccagcttatagcacaagctcttatcatgata 14576800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 41505554 - 41505610
Alignment:
Q  190 ggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||||| |||||| ||||||||||||||||||||| |||| ||||||| ||||||    
T  41505554 ggcctgtttggataaacagcttatttgcagcttatagcacaaacgcttatgatgata 41505610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 329
Target Start/End: Original strand, 49938747 - 49938831
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataagcagnnnnnnncttttgaaaattgtcatcagctgtgttca 329  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||  |       ||||||||||||||||| |||||| ||||    
T  49938747 tataagttgtttttataagctatattagagaacttatgaaaataagttgaaaaaagcttttgaaaattgtcataagctgttttca 49938831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 5894354 - 5894300
Alignment:
Q  192 cctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| |||||| ||||||||||| ||||||||| ||||| |||||||||||||    
T  5894354 cctgtttggataaacagcttatttgaagcttatagcacaagtgcttatcatgata 5894300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 27820531 - 27820477
Alignment:
Q  192 cctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| |||||| || |||||||||||||||||| | |||||||||||||||||    
T  27820531 cctgtttggataaacaacttatttgcagcttatagcataagcgcttatcatgata 27820477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 38247320 - 38247377
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgatat 247  Q
    ||||||||| |||||| ||||| ||||||||||||||| |||||| |||||||||||||    
T  38247320 gggcctgtttggataaacagct-atttgcagcttatagcacaagcacttatcatgatat 38247377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 17603454 - 17603409
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataag 290  Q
    |||||||| |||||||||||||| || |||||||||||||||||||    
T  17603454 tataagttgtttttataagctatattggagaacttctgaaaataag 17603409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 33546657 - 33546596
Alignment:
Q  186 tttgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgatat 247  Q
    |||||||||||| |||||| ||||||||| |||||||| || ||||| | ||||||||||||    
T  33546657 tttgggcctgtttggataaacagcttattcgcagcttaaagcacaagtgtttatcatgatat 33546596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 41195398 - 41195341
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||| ||||||  | |||||||||||||||||| ||||||||||||| |||||    
T  41195398 gggcctgtttggataaataacttatttgcagcttatagcacaagcgcttatcctgata 41195341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 47499033 - 47498980
Alignment:
Q  193 ctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| |||||| || |||||||||||||||||| ||||| |||||||||||||    
T  47499033 ctgtttggataaacaacttatttgcagcttatagcacaagtgcttatcatgata 47498980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 37517264 - 37517220
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataa 289  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||||    
T  37517264 tataagttattttaataagctatattagagaactcctgaaaataa 37517220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 45661304 - 45661248
Alignment:
Q  184 actttgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatc 240  Q
    |||| |||||||||||||||| ||| |||||||||||||| || |||||| ||||||    
T  45661304 acttggggcctgttgggataaacagattatttgcagcttagagcacaagctcttatc 45661248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 51688576 - 51688628
Alignment:
Q  194 tgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||| || |||||||||||||||||| ||||| |||||||||||||    
T  51688576 tgtttggataaacaacttatttgcagcttatagtacaagtgcttatcatgata 51688628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 17603576 - 17603525
Alignment:
Q  188 tgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttat 239  Q
    |||||||||| |||||| | ||||||||| ||||||||| ||||||||||||    
T  17603576 tgggcctgtttggataaacggcttatttgtagcttatagcacaagcgcttat 17603525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 24562503 - 24562452
Alignment:
Q  193 ctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatga 244  Q
    ||||| |||||| ||||||||||||||||||||| ||| | |||||||||||    
T  24562503 ctgtttggataaacagcttatttgcagcttatagcacatgtgcttatcatga 24562452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 1510510 - 1510456
Alignment:
Q  192 cctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| |||||| ||||||||||| | ||||||| ||||||||||||| |||||    
T  1510510 cctgtttggataaacagcttatttgtatcttatagcacaagcgcttatcttgata 1510456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 14331666 - 14331712
Alignment:
Q  200 gataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| ||||||||||| ||||||||| |||||||||| ||||||||    
T  14331666 gataaacagcttatttgaagcttatagcacaagcgcttctcatgata 14331712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 22343953 - 22344011
Alignment:
Q  188 tgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||||||| |||||| || |||||||||| ||||  | |||||||||||||||||||    
T  22343953 tgggcctgtttggataatcaacttatttgcaacttaccgcacaagcgcttatcatgata 22344011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 49938614 - 49938664
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttat 239  Q
    ||||||||| ||||||  ||||||| |||||||||||| ||||||||||||    
T  49938614 gggcctgtttggataaaaagcttatctgcagcttatagcacaagcgcttat 49938664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 3234085 - 3234040
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataag 290  Q
    |||||||| |||||||||||||| || |||||||| ||||||||||    
T  3234085 tataagttgtttttataagctatattggagaacttatgaaaataag 3234040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 5741607 - 5741648
Alignment:
Q  246 ataagttatttttataagctatgttagagaacttctgaaaat 287  Q
    ||||| |||||||||||||||| ||||||||||| |||||||    
T  5741607 ataagctatttttataagctatattagagaacttatgaaaat 5741648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 420
Target Start/End: Complemental strand, 2037421 - 2037342
Alignment:
Q  340 atattcattaaccatgatttggattcaaacatgcaattgaaaatcgtggttaattgtgttaagtggatgattaatgagttg 420  Q
    ||||| |||||||||||||||  ||||||  |||| |||||| | ||||||||||||||| || ||||| | |||||||||    
T  2037421 atattaattaaccatgatttgagttcaaatgtgcacttgaaatt-gtggttaattgtgttgaggggatggtcaatgagttg 2037342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 30956825 - 30956773
Alignment:
Q  194 tgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  30956825 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgata 30956773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 30972637 - 30972585
Alignment:
Q  194 tgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||| ||||||||||||||||||||| ||||| |||||||||||||    
T  30972637 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgata 30972585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 35959661 - 35959603
Alignment:
Q  188 tgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| |||| |||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  35959661 tgggcttgtttggataaacagcttatttgcagcttatatcacaagctcttatcatgata 35959603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 34034037 - 34034094
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||| |||||| || ||||||| |||||||||| ||| |||||||||||||||    
T  34034037 gggcctgtttggataaacaacttattttcagcttatagaacaggcgcttatcatgata 34034094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 39980612 - 39980652
Alignment:
Q  206 cagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  39980612 cagcttatttgcagcttataggacaaacacttatcatgata 39980652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 31365466 - 31365419
Alignment:
Q  199 ggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| ||||||||||||||||||||| ||||| | |||||||||||    
T  31365466 ggataaacagcttatttgcagcttatagcacaagtgattatcatgata 31365419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 28240213 - 28240259
Alignment:
Q  200 gataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| || ||||| |||||||||||| |||||||||||||||||||    
T  28240213 gataaacaacttatctgcagcttatagcacaagcgcttatcatgata 28240259  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 36631126 - 36631043
Alignment:
Q  240 catgatataagttatttttataagctatgttagagaacttctgaaaataagcagnnnnnnncttttgaaaattgtcatcagctg 323  Q
    |||| |||||||| ||||||| |||||| || |||||||| |||||||||||||       ||||||||||| ||||| |||||    
T  36631126 catgctataagttgtttttatgagctatattggagaacttatgaaaataagcagaaaaaagcttttgaaaatcgtcataagctg 36631043  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 39980724 - 39980774
Alignment:
Q  240 catgatataagttatttttataagctatgttagagaacttctgaaaataag 290  Q
    |||| |||||||| |||||||||||||| || |||||||| ||||||||||    
T  39980724 catgctataagttgtttttataagctatattggagaacttatgaaaataag 39980774  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 49034333 - 49034291
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaat 287  Q
    |||||||| |||||||||||||| || ||||||||||||||||    
T  49034333 tataagttgtttttataagctatattggagaacttctgaaaat 49034291  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 2719347 - 2719392
Alignment:
Q  201 ataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||||||| |||||||||| |||| ||||||||||||||    
T  2719347 ataaacagcttatttacagcttatagcacaaacgcttatcatgata 2719392  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 46886888 - 46886835
Alignment:
Q  192 cctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgat 245  Q
    |||||| |||||| || |||||||||||||||||| | ||| ||||||||||||    
T  46886888 cctgtttggataaacaacttatttgcagcttatagcataagtgcttatcatgat 46886835  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 1508768 - 1508728
Alignment:
Q  206 cagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||||||| ||||||| ||||| |||||||||||||    
T  1508768 cagcttatttgcaacttatagcacaagtgcttatcatgata 1508728  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 35328351 - 35328300
Alignment:
Q  194 tgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| ||||||  ||||||||||||||||||| ||||||||||||| ||||||    
T  35328351 tgtttggataaatagcttatttgcagcttata-gacaagcgcttattatgata 35328300  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 36189562 - 36189610
Alignment:
Q  241 atgatataagttatttttataagctatgttagagaacttctgaaaataa 289  Q
    |||||||||| |||||||||||| ||| || |||||||| |||||||||    
T  36189562 atgatataagctatttttataagatatattggagaacttatgaaaataa 36189610  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 42800119 - 42800063
Alignment:
Q  187 ttgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatg 243  Q
    |||||| |||| |||| | ||||||||||| ||||||||| | ||||||||||||||    
T  42800119 ttgggcatgtttggattaacagcttatttgtagcttatagcagaagcgcttatcatg 42800063  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 6538382 - 6538440
Alignment:
Q  188 tgggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||||||| ||||||  |||||||||||||||||||| |||||| ||||| ||||||    
T  6538382 tgggcctgtttggataaatagcttatttgcagcttatagcacaagcacttataatgata 6538440  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 264250 - 264304
Alignment:
Q  192 cctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| |||| | ||||| ||||||||||||||| ||||| |||||||||||||    
T  264250 cctgtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgata 264304  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 34430593 - 34430639
Alignment:
Q  200 gataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| || |||||||||||||||||| ||||| |||||||||||||    
T  34430593 gataaacatcttatttgcagcttatagcacaagtgcttatcatgata 34430639  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 35069439 - 35069485
Alignment:
Q  200 gataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| || |||||||||||||||||| ||||||| |||||||||||    
T  35069439 gataaacaacttatttgcagcttatagcacaagcgtttatcatgata 35069485  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 1310281 - 1310314
Alignment:
Q  207 agcttatttgcagcttataggacaagcgcttatc 240  Q
    |||||||||||||||||||||||||| |||||||    
T  1310281 agcttatttgcagcttataggacaagagcttatc 1310314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 8365157 - 8365113
Alignment:
Q  200 gataagcagcttatttgcagcttataggacaagcgcttatcatga 244  Q
    ||||| ||||||||| ||||||||||| | |||||||||||||||    
T  8365157 gataaacagcttattcgcagcttatagcataagcgcttatcatga 8365113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 18076083 - 18076115
Alignment:
Q  210 ttatttgcagcttataggacaagcgcttatcat 242  Q
    ||||||||||||||||| |||||||||||||||    
T  18076083 ttatttgcagcttatagcacaagcgcttatcat 18076115  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 157973 - 158030
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||||||| |||||| ||||||||||||||||||||| |||| | ||||| ||||||    
T  157973 gggcctgtttggataaacagcttatttgcagcttatagcacaaacacttatgatgata 158030  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 27083 - 27030
Alignment:
Q  193 ctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| |||||| || ||| |||||||||||||| |||||||||||||||||||    
T  27083 ctgtttggataaacatcttgtttgcagcttatagcacaagcgcttatcatgata 27030  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 45935417 - 45935365
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatca 241  Q
    ||||||||| |||||| || ||||||||||||||||||  |||||||||||||    
T  45935417 gggcctgtttggataaacaacttatttgcagcttatagctcaagcgcttatca 45935365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 3155489 - 3155536
Alignment:
Q  199 ggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| || ||||| |||||||||||| |||||||||||||||||||    
T  3155489 ggataaacaacttatctgcagcttatagtacaagcgcttatcatgata 3155536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 44138445 - 44138492
Alignment:
Q  199 ggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||||| ||||||||||||||||| ||| |||||| ||||||||||||    
T  44138445 ggataaacagcttatttgcagcttttagtacaagcacttatcatgata 44138492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 3603544 - 3603507
Alignment:
Q  379 aaaatcgtggttaattgtgttaagtggatgattaatga 416  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  3603544 aaaaccgtggttaattgtgttaagtggatggttaatga 3603507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 17204008 - 17204061
Alignment:
Q  193 ctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    ||||| |||||| || |||||||||||||||||| |||||| ||||||| ||||    
T  17204008 ctgtttggataaacaacttatttgcagcttatagaacaagcacttatcacgata 17204061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 9760440 - 9760484
Alignment:
Q  245 tataagttatttttataagctatgttagagaacttctgaaaataa 289  Q
    |||||||| |||||||||||||| || |||||||| |||||||||    
T  9760440 tataagttgtttttataagctatattggagaacttatgaaaataa 9760484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 40829651 - 40829695
Alignment:
Q  376 ttgaaaatcgtggttaattgtgttaagtggatgattaatgagttg 420  Q
    |||||||| ||||||||||||| | |||||||| |||||||||||    
T  40829651 ttgaaaattgtggttaattgtgctcagtggatggttaatgagttg 40829695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 44863151 - 44863099
Alignment:
Q  194 tgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||| || |||||||||||||||||| |||||| ||| ||||||||    
T  44863151 tgtttggataaacaacttatttgcagcttatagcacaagcacttgtcatgata 44863099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 49202527 - 49202579
Alignment:
Q  194 tgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgata 246  Q
    |||| |||||| || |||||||||||||||||| |||||| |||| |||||||    
T  49202527 tgtttggataaacaacttatttgcagcttatagtacaagcacttaacatgata 49202579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 50662926 - 50662870
Alignment:
Q  189 gggcctgttgggataagcagcttatttgcagcttataggacaagcgcttatcatgat 245  Q
    |||| |||| |||||| || |||||||||||||||||  ||||| ||||||||||||    
T  50662926 gggcatgtttggataaacaacttatttgcagcttatatcacaagagcttatcatgat 50662870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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