View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14769_high_5 (Length: 223)
Name: NF14769_high_5
Description: NF14769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14769_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 44 - 205
Target Start/End: Original strand, 8907018 - 8907179
Alignment:
| Q |
44 |
tgttcttaaacaaatagaagaacaacttattggagcttcatgctatcaannnnnnnngcagcaccatccgacaatgttgttgcagcaccatcttagttga |
143 |
Q |
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| T |
8907018 |
tgttcttaaacaaatagaagaacaacttattggagctttacgctattaattttttttgcagcaccatccgataatgttgttgcagcaccatcttagttga |
8907117 |
T |
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| Q |
144 |
tgtccaaattcaccatgactaagatatggtcgtgaatatttttgtgcattttcaacgacatc |
205 |
Q |
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| T |
8907118 |
tgtccaaattcaccatgaccaagatatggtcgtgaatatttttgtgaattttcaatgacatc |
8907179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 8904139 - 8904324
Alignment:
| Q |
17 |
ataagagagtgaatgttaaaaatagaatgttcttaaacaaatagaagaacaacttattggagcttcatgctatcaannnnnnnngcagcaccatccgaca |
116 |
Q |
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| T |
8904139 |
ataagagagggaatgttagaaatagagtgttcttaaacagatggaagaacaacttattagagctttatactattaattggtttcgcagcaccatctttta |
8904238 |
T |
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| Q |
117 |
atgttgttgcagcaccatcttagttgatgtccaaattcaccatgactaagatatggtcgtgaatatttttgtgcattttcaacgacatc |
205 |
Q |
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| T |
8904239 |
atgttg---caacaccattttggtggatgtccaaattcaccatgaccaagatatggtcgtgaatatttttgtgcatcttcaacgacatc |
8904324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 8909793 - 8909868
Alignment:
| Q |
6 |
aatttcatacgataagagagtgaatgttaaaaatagaatgttcttaaacaaatagaagaacaacttattggagctt |
81 |
Q |
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| T |
8909793 |
aatttcatacgataagagtgtgagtgttagaaatagagtgttcttaaacaaacagaagaacaacttattagagctt |
8909868 |
T |
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