View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14769_low_4 (Length: 340)
Name: NF14769_low_4
Description: NF14769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14769_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 3254014 - 3253692
Alignment:
| Q |
1 |
catgtagctttagcaagatgatgagcaaccacattagcttctctcttagagaactcagcatgagttataaacactagactcaactatgtgacgacactcc |
100 |
Q |
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| T |
3254014 |
catgtagctttagcaagatgatgagcaaccacattagcttctctcttagagaattcagcatgagttataaacactagactcaaatatgtgacgacacttc |
3253915 |
T |
|
| Q |
101 |
ctaataacaagaccatacttagtataatcatgcatgaactacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctc--gagtcttga |
198 |
Q |
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| T |
3253914 |
ctaataacaagaccatact-agtataatcatgcatgaactacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctcttgagtcttga |
3253816 |
T |
|
| Q |
199 |
cccaatgaatcgcagcaagtagcatgttcgctttgcctatgggaacagaaaaaataggttctagccacatcgttttagctcaaacaaaaaaccctatttc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3253815 |
cccaatgaatcgcagcaagtagcatgttcgctttgcctatgggaacagaaaaaaaaggttctagccacatcgttttagctcaaacaaaaaaccctatttc |
3253716 |
T |
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| Q |
299 |
atctcttatacgttacactattaa |
322 |
Q |
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| T |
3253715 |
atctcttatacgttacactattaa |
3253692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 27757199 - 27757131
Alignment:
| Q |
10 |
ttagcaagatgatgagcaaccacattagcttctctcttagagaactcagcatgagttataaacactaga |
78 |
Q |
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| T |
27757199 |
ttagcaagatgaagaacaaccatgttagcgtctctcttagagaactcaacatgagttgtaaacactaga |
27757131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 309
Target Start/End: Complemental strand, 27757055 - 27756893
Alignment:
| Q |
139 |
ctacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctcgagtcttgacccaatgaatcgcagcaagtagcatgttcgctttgcctat |
238 |
Q |
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||||||| ||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||| ||| || |||| ||| ||| | |||| |
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| T |
27757055 |
ctacaattttggagtgtgtagagaaaattatattatcaaatccaagctctc------tgacccaatgaattgcaacaggtagtgctttcacttcggctat |
27756962 |
T |
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| Q |
239 |
gggaacagaaaaaataggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatac |
309 |
Q |
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| T |
27756961 |
gtgaac-gaaaaaa-aggttttaaccacatcgttttatctccaacaaaagcccctatttattctcttatac |
27756893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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