View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14769_low_5 (Length: 270)
Name: NF14769_low_5
Description: NF14769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14769_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 24284531 - 24284269
Alignment:
| Q |
1 |
actgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatttcctaaactcaaaaattcttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24284531 |
actgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatttcctagactcaaaaattcttttg |
24284432 |
T |
|
| Q |
101 |
gtgggaatattactaggttcattacttttccacaactgcacttttgattcctaaaaatgctcaaacgggctccactttgctttctaacacaatcccagtt |
200 |
Q |
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| T |
24284431 |
gtgggaacattactaggttcattacttttccacaactgcacttttgattcctaaaaatgctcaaacgggctccactttg-tttctaacacaatcccagtt |
24284333 |
T |
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| Q |
201 |
ctcgcacacgaagtgctgcaaaggttctgtgtcgtctatattcagtttgagcttttgacaataa |
264 |
Q |
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| T |
24284332 |
ctcgcacacgaagtgctgcaaaggttctgtgtcgtctatattcagctggagcttttgacaataa |
24284269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 21200020 - 21199751
Alignment:
| Q |
1 |
actgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatttcctaaactcaaaaattctttt- |
99 |
Q |
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| T |
21200020 |
actgtcccaaaaacattaggcatcacataaagatcgtctgaaataataaatgcagcagtttccttaacaaaaccgcttcctaagctcaaactttctggtt |
21199921 |
T |
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| Q |
100 |
-----ggtgggaatattactaggttcattacttttccacaactgcacttttgattcctaaaaatgctcaaacgggctccactttgctttctaacacaatc |
194 |
Q |
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| T |
21199920 |
gctgcggtggagataatactttgttcattactcttccacaactgcacatttgattcctaaataagctcaaaaggttcccgctttcctttctaccacaatc |
21199821 |
T |
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| Q |
195 |
ccagttctcgcacacgaagtgctgcaaaggttctgtgtcgtctatattcagtttgagcttttgacaataa |
264 |
Q |
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| T |
21199820 |
ccaatccccacagatgtagtgctgcataggttctgtgtcgtcgatattcagtttcatcttctgacaataa |
21199751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 24232214 - 24232455
Alignment:
| Q |
6 |
tccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatttcctaaactcaaaaattcttttggtggg |
105 |
Q |
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|||||||||||||||||| ||| ||||||||||||||| ||||| || || ||||||| |||| |||||| ||| | | ||||| |||| ||| |
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| T |
24232214 |
tccaaaaacattaggcataacacaaagatcatcagaaatgataaaagtagcattttccttcacaaaaccattttctatattgaaaaa--cttt----ggg |
24232307 |
T |
|
| Q |
106 |
aatattactaggttcattacttttccacaactgcacttttgattcctaaaaatgctcaaacgggctccactttgctttctaacacaatcccagttctcgc |
205 |
Q |
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| T |
24232308 |
aatacttctctgttcattactttcccacaatagcatttttggttcctaaaaaagctcaaaaggcagccactaacctttcttctacaatcccagttctcgc |
24232407 |
T |
|
| Q |
206 |
acacgaagtgctgcaaaggttctgtgtcgtctatattcagtttgagct |
253 |
Q |
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|||| |||| |||||| |||| |||||||||||||||||||| |||| |
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| T |
24232408 |
acacaaagtactgcaagcgttcagtgtcgtctatattcagtttcagct |
24232455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 21194632 - 21194498
Alignment:
| Q |
130 |
ccacaactgcacttttgattcctaaaaatgctcaaacgggctccactttgctttctaacacaatcccagttctcgcacacgaagtgctgcaaaggttctg |
229 |
Q |
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|||||||||||| ||||||||||||| ||||||||| || || || | |||||||||||||||||||||| | || | |||||| | || ||||||| |
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| T |
21194632 |
ccacaactgcacatttgattcctaaatatgctcaaaaggttccctctctcctttctaacacaatcccagttcccacagatgaagtgtttcatgggttctg |
21194533 |
T |
|
| Q |
230 |
tgtcgtctatattcagtttgagcttttgacaataa |
264 |
Q |
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||||||| ||||||||||| | ||| ||||||||| |
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| T |
21194532 |
tgtcgtcgatattcagtttcatcttctgacaataa |
21194498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21194767 - 21194698
Alignment:
| Q |
1 |
actgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaa |
70 |
Q |
| |
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|||||||||||| |||||||||||||| |||||| || ||||| ||||||| || ||||||||| ||| |
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| T |
21194767 |
actgttccaaaatcattaggcatcacacaaagatcgtcggaaataataaatgcagcagtttccttaacaa |
21194698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 3494735 - 3494771
Alignment:
| Q |
229 |
gtgtcgtctatattcagtttgagcttttgacaataat |
265 |
Q |
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|||||||||||||||||||||||||| || ||||||| |
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| T |
3494735 |
gtgtcgtctatattcagtttgagcttctggcaataat |
3494771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 10989123 - 10989067
Alignment:
| Q |
208 |
acgaagtgctgcaaaggttctgtgtcgtctatattcagtttgagcttttgacaataa |
264 |
Q |
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|||||||||||||| |||||||||||||||||||| || |||||||| || |||||| |
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| T |
10989123 |
acgaagtgctgcaatggttctgtgtcgtctatattgagattgagcttctggcaataa |
10989067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3151566 - 3151479
Alignment:
| Q |
1 |
actgttccaaaaacattaggcatcacagtaagatcatcagaaattataaatgtggcggtttccttagcaaagccatttcctaaactca |
88 |
Q |
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| T |
3151566 |
actgttgccaaaacattaggcatcacaaaaagatcgtcggaaatgataaaagtagcagtttcttcaacaaagccatttcctaaactca |
3151479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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