View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1476_high_3 (Length: 259)
Name: NF1476_high_3
Description: NF1476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1476_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 2182169 - 2182400
Alignment:
| Q |
18 |
acctgatcaatagttagtggatgagtggtgttgtgtaggaactgtggtggttttgaaatccaagattgaatgatttgttgagagaaggagttgagtccaa |
117 |
Q |
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| T |
2182169 |
acctgatcaatagttagtggatgagtggtgttgtgtaggaattgtggtggttttgaaatccaagattgaatgatttgttgagagagggagttgagtccaa |
2182268 |
T |
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| Q |
118 |
gacctgcaccagtaggacttccagttggaggtgaggtggttttttcaaggacaaggacatcccaaccagctaagataagggcatgtgcacttgatatccc |
217 |
Q |
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| T |
2182269 |
gacctgcaccagtaggacttccagttggaggtgaggtggttttttcaaggacaaggacatcccaaccagctaagataagggcatgtgcacttgatatccc |
2182368 |
T |
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| Q |
218 |
tcctatgctacctccaacaatcactgcctttg |
249 |
Q |
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| T |
2182369 |
tcctatgctacctccaacaatcactgcctttg |
2182400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 249
Target Start/End: Complemental strand, 2184347 - 2184173
Alignment:
| Q |
75 |
atccaagattgaatgatttgttgagagaaggagttgagtccaagacctgcaccagtaggacttccagttggaggtgaggtggttttttcaaggacaagga |
174 |
Q |
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|||||||| |||||||||| |||||||| | |||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||| | |
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| T |
2184347 |
atccaagagtgaatgattttttgagagagagggttgagagcaagacctgcaccagtgggatttccagttggaggtgaaatggttttttcaagaacaataa |
2184248 |
T |
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| Q |
175 |
catcccaaccagctaagataagggcatgtgcacttgatatccctcctatgctacctccaacaatcactgcctttg |
249 |
Q |
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| T |
2184247 |
catcccaacctgctaaagtaagagcatttgcacttgatataccagctatgctacccccaacaatcactgcttttg |
2184173 |
T |
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